Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0984
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.8  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 3   RTLNFLNQHSSFY 41
           RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 240  NLVAGALCHS*LLLPW*PPRHEV 308
            NL A AL  S +L+ W PP  E+
Sbjct: 1012 NLEARALSSSEILITWSPPLPEL 1034


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 240  NLVAGALCHS*LLLPW*PPRHEV 308
            NL A AL  S +L+ W PP  E+
Sbjct: 1008 NLEARALSSSEILITWSPPLPEL 1030


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 231 YYGNLVAGALC 263
           YYGN++  A+C
Sbjct: 326 YYGNIMVNAMC 336


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 96  QLEAPCSFNFCSLRAIRRY 40
           + +   SF  C L+A+R Y
Sbjct: 131 ECDVALSFKLCMLKAMRNY 149


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 331 RERVMFSITSWRGGYHG 281
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 331 RERVMFSITSWRGGYHG 281
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,181
Number of Sequences: 438
Number of extensions: 2039
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)