Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0984
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    33   0.13 
At4g15840.1 68417.m02409 expressed protein                             29   1.2  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.8  
At5g07790.1 68418.m00892 expressed protein                             27   6.4  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   6.4  

>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -3

Query: 363 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDTMRRPL 244
           K E     SDV+NG C +S  G G T    V+C T R PL
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGTSRTPL 49


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 158 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 250
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 68  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 166
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 89  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 232
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -3

Query: 162 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 16
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,467,883
Number of Sequences: 28952
Number of extensions: 156353
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)