Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0983
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q00094 Cluster: Gene 73 protein kinase; n=1; Ictalurid ...    33   4.8  
UniRef50_A2DC58 Cluster: Putative uncharacterized protein; n=1; ...    33   8.3  

>UniRef50_Q00094 Cluster: Gene 73 protein kinase; n=1; Ictalurid
           herpesvirus 1|Rep: Gene 73 protein kinase - Ictalurid
           herpesvirus 1 (IcHV-1) (Channel catfish herpesvirus)
          Length = 962

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 523 ILALRKSMSYVLVKFHYTLDL--AQNYMFYVL-KKKNLLGIGFSG 648
           I A++KS+ YV+  FHYTL     + YM YV   K+++  + F G
Sbjct: 746 IQAIQKSIPYVVPVFHYTLGAHGTKRYMIYVTPAKRSITELNFDG 790


>UniRef50_A2DC58 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 3355

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +2

Query: 11   INILELIL*RNDLLTSVEDSYKSSEYDSLSFFNANVLRTTSILSNGIYFFFKS*ALYFKT 190
            +N++E  + RN + TS+ D++ S EY  LS +       +S+++   YFF     ++ + 
Sbjct: 1175 LNVIENEM-RNSVKTSIGDAFTSREYTDLSKWYQKYPIQSSLIAENAYFFSSVMEIFSRE 1233

Query: 191  Y 193
            Y
Sbjct: 1234 Y 1234


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,241,063
Number of Sequences: 1657284
Number of extensions: 8648138
Number of successful extensions: 16122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16111
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)