Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0983
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical p...    30   1.7  
AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine r...    29   2.3  
Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF125459-10|AAD12841.2|  177|Caenorhabditis elegans Serpentine r...    29   4.0  
AF125459-9|AAD12845.2|  328|Caenorhabditis elegans Serpentine re...    28   6.9  

>U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical
           protein T22F3.8 protein.
          Length = 482

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 341 FGLACLLKTFY---FSLWFKMADRIMTTFNLLLHYVSCIVAFCFYYYLCS*YVIIKFS 505
           F L CL +TF+    + +   A   M   N    ++  +V F     LCS Y+II F+
Sbjct: 7   FTLHCLYRTFFNLKVAFFLGSAGLTMMLLNNYYRFIVLLVGFLCLASLCSNYLIINFT 64


>AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein5 protein.
          Length = 353

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 416 FNLLLHY-VSCIVAFCFYYYLCS*YVIIKFSHHFSL 520
           + +L+H  V+C++    Y+YLC  Y+I KF +  S+
Sbjct: 199 YTILVHNAVTCVLTTGIYFYLCY-YLIFKFGYSTSM 233


>Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical
           protein F13A7.13 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 535 RKSMSYVLVKFH--YTLDLAQNYMFYVLKKKNLLGIGFSG 648
           RK +S  L+ +H  Y + LA   +F+V   +NLLG+   G
Sbjct: 163 RKKLSIFLIIYHQAYAIFLALVMLFHVFPLRNLLGMNACG 202


>AF125459-10|AAD12841.2|  177|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 23 protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 414 LSIYYCITCPVLSHFVFIIT-YVLSMLSLNFHITLAYNFSFT 536
           L++++CI C VL    FI+T Y L+ML         Y   FT
Sbjct: 66  LNLFHCIPCVVLVTIFFIVTIYGLTMLEYRIKNVERYLAIFT 107


>AF125459-9|AAD12845.2|  328|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 22 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 414 LSIYYCITCPVLSHFVFIIT-YVLSML 491
           L++++CI C VL    FI+T Y L+ML
Sbjct: 204 LNLFHCIPCVVLVTIFFIVTIYGLTML 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,344
Number of Sequences: 27780
Number of extensions: 222345
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)