Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0982
         (688 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   6.8  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   6.8  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    23   6.8  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   9.0  

>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 246 TQESCFANETTTGSESRPAEKIRRETQRADV 338
           +Q+   ++ TT+ S S+P+ + +++   ADV
Sbjct: 5   SQQPTASSSTTSSSSSKPSPQQQQQLHSADV 35


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 246 TQESCFANETTTGSESRPAEKIRRETQRADV 338
           +Q+   ++ TT+ S S+P+ + +++   ADV
Sbjct: 5   SQQPTASSSTTSSSSSKPSPQQQQQLHSADV 35


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 168 SAMPGAEPSHCLPQPSCYLPLHR 236
           S M    PS+ LPQ     P+HR
Sbjct: 388 SLMASVAPSYGLPQQQNQCPIHR 410


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 131 PPDGEWLPSPMDFSNARG 184
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,945
Number of Sequences: 2352
Number of extensions: 12236
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)