Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0982
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U74667-1|AAB18236.1|  513|Homo sapiens tat interactive protein p...    32   1.7  
U40989-1|AAB02683.1|  482|Homo sapiens tat interactive protein p...    32   1.7  
BC117167-1|AAI17168.1|  513|Homo sapiens HIV-1 Tat interacting p...    32   1.7  
BC064912-1|AAH64912.1|  513|Homo sapiens HIV-1 Tat interacting p...    32   1.7  
AY214165-1|AAO21130.1|  513|Homo sapiens HIV-1 Tat interactive p...    32   1.7  

>U74667-1|AAB18236.1|  513|Homo sapiens tat interactive protein
           protein.
          Length = 513

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 171 AMPGAEPSHCLPQPSCYLPLHRKLTTQESCFANETTTGSESRPA 302
           A+PG EP   L   SC  P HR    +    +  T   SE+ PA
Sbjct: 124 AIPGGEPDQPLSSSSCLQPNHRSTKRKVEVVSPATPVPSETAPA 167


>U40989-1|AAB02683.1|  482|Homo sapiens tat interactive protein
           protein.
          Length = 482

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 171 AMPGAEPSHCLPQPSCYLPLHRKLTTQESCFANETTTGSESRPA 302
           A+PG EP   L   SC  P HR    +    +  T   SE+ PA
Sbjct: 93  AIPGGEPDQPLSSSSCLQPNHRSTKRKVEVVSPATPVPSETAPA 136


>BC117167-1|AAI17168.1|  513|Homo sapiens HIV-1 Tat interacting
           protein, 60kDa protein.
          Length = 513

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 171 AMPGAEPSHCLPQPSCYLPLHRKLTTQESCFANETTTGSESRPA 302
           A+PG EP   L   SC  P HR    +    +  T   SE+ PA
Sbjct: 124 AIPGGEPDQPLSSSSCLQPNHRSTKRKVEVVSPATPVPSETAPA 167


>BC064912-1|AAH64912.1|  513|Homo sapiens HIV-1 Tat interacting
           protein, 60kDa protein.
          Length = 513

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 171 AMPGAEPSHCLPQPSCYLPLHRKLTTQESCFANETTTGSESRPA 302
           A+PG EP   L   SC  P HR    +    +  T   SE+ PA
Sbjct: 124 AIPGGEPDQPLSSSSCLQPNHRSTKRKVEVVSPATPVPSETAPA 167


>AY214165-1|AAO21130.1|  513|Homo sapiens HIV-1 Tat interactive
           protein, 60kDa protein.
          Length = 513

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 171 AMPGAEPSHCLPQPSCYLPLHRKLTTQESCFANETTTGSESRPA 302
           A+PG EP   L   SC  P HR    +    +  T   SE+ PA
Sbjct: 124 AIPGGEPDQPLSSSSCLQPNHRSTKRKVEVVSPATPVPSETAPA 167


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,928,273
Number of Sequences: 237096
Number of extensions: 1938361
Number of successful extensions: 4235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4235
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)