Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0982
(688 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 26 0.29
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 2.7
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 2.7
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.7
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 8.3
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 8.3
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 8.3
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 8.3
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 8.3
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 8.3
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 8.3
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 26.2 bits (55), Expect = 0.29
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 584 RLHFIAFRAGDKKYISCKNNYPHFPTGSGFTT 679
R+H + R G+KKY + + + +F GS TT
Sbjct: 42 RIHTVRTRGGNKKYRALRLDTGNFSWGSECTT 73
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 31 GEYVALKKIVVAR*HRTFYFLFFYCPC 111
GEY LK ++ + ++Y + Y PC
Sbjct: 226 GEYSCLKVDLLFKREFSYYLIQIYIPC 252
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 31 GEYVALKKIVVAR*HRTFYFLFFYCPC 111
GEY LK ++ + ++Y + Y PC
Sbjct: 226 GEYSCLKVDLLFKREFSYYLIQIYIPC 252
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 131 PPDGEWLPSPMDFSNARG 184
PPD W P + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
+YR+ G R S+ + DR D L +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
+YR+ G R S+ + DR D L +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
+YR+ G R S+ + DR D L +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
+YR+ G R S+ + DR D L +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
+YR+ G R S+ + DR D L +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
+YR+ G R S+ + DR D L +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
+YR+ G R S+ + DR D L +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,447
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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