Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0982
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi...    29   2.9  
At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At1g78730.1 68414.m09176 F-box family protein contains F-box dom...    28   6.7  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    27   8.8  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    27   8.8  

>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat;
           similar to ESTs gb|R30192 and gb|AA651017
          Length = 913

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 144 SGYRRPWTSAMPGAEPSHCLPQPSCYLPLHRKLTTQESCFANETT 278
           +G+++PW +   G + S     PS   P   + T Q+  + N+TT
Sbjct: 787 NGHQQPWANQNTGHQQSWANQTPSQQQPWANQTTGQQQGWGNQTT 831


>At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 267

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 653 NVGNYFCSLCIF 618
           N+G YFCS+CIF
Sbjct: 87  NMGEYFCSICIF 98


>At1g78730.1 68414.m09176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 420

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 159 PWTSAMPGAEPSHCLPQPSCYLP 227
           P  S  PG EP   LP P C LP
Sbjct: 330 PGFSKTPGEEPISILPGPQCNLP 352


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 113 GRGAHGPPDGEWLPSPMDFSN 175
           GR    P  GEW P+P D S+
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 113 GRGAHGPPDGEWLPSPMDFSN 175
           GR    P  GEW P+P D S+
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,798,955
Number of Sequences: 28952
Number of extensions: 256235
Number of successful extensions: 521
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)