Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0981
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    27   2.5  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   3.3  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    26   5.8  

>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 183 RAIKRKLYIPRNAHVDIYPAIHKCIMITT*TRRS 82
           RA+K  +YIPR     +Y  IHK       T RS
Sbjct: 280 RAVKNMVYIPRYDKRTVYGVIHKKFHAVRLTLRS 313


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 360 KINKQKCSTHHQSFIRSCSNITSLNY 283
           +  K   S HH  FI + SN+ ++NY
Sbjct: 809 EFEKDDDSNHHIDFITAASNLRAMNY 834


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 429 DAGIPC*SYINKPVKYYHNSENTKINKQKCSTHHQSFIRSCS 304
           DAG    +Y + P+ Y+H+    K+ +   + +    I  CS
Sbjct: 199 DAGAHAEAYYSLPITYFHSKAEKKVTEFLRNRNWSRSITECS 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,423
Number of Sequences: 5004
Number of extensions: 45321
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)