Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0981
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)                    30   1.5  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2)                    28   6.1  

>SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)
          Length = 218

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -1

Query: 574 NCKYSCKHPN-RR*SSDFMDIGHSDWILVCLQLKINI 467
           NC Y   HP+ +R S + +D   S++ILV L+LK+N+
Sbjct: 156 NCVYKLIHPHIKRNSQNALD-AFSEFILVLLRLKLNL 191


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 233  NIFLKEKNCVNLVGLFTVLLKESSTYLETH 144
            ++ L++ NC+  +GLF   L+E S+ LE H
Sbjct: 5164 SLALQKANCLQRLGLFKKQLEEKSSQLELH 5193


>SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2)
          Length = 389

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 402 INKPVKYYHNSENTKINKQKCSTHHQSFIRSCSN 301
           +NK +K      N   +    ST HQ+++R C+N
Sbjct: 288 VNKRIKQEGQQPNIPNDDTPASTRHQTYLRVCAN 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,763,567
Number of Sequences: 59808
Number of extensions: 320608
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)