Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0981
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL...    28   5.0  
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc...    28   6.6  

>At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL-1
           [Homo sapiens] GI:1381142
          Length = 374

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 419 IPASTLACDALSTFLDNVYFQLQAN*DPIAVADIHKIR 532
           IP  +L    L+ FLD VY ++Q+    + +A IHK R
Sbjct: 129 IPIPSLDEVGLTCFLDLVYCEMQSTAKEVVIALIHKER 166


>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
           2b protein [Arabidopsis thaliana] GI:509423; contains
           Pfam profiles PF00134: Cyclin, N-terminal domain,
           PF02984: Cyclin, C-terminal domain; identical to cDNA
           cyc2a mRNA for cyclin 2a protein GI:728518
          Length = 429

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 366 FHCYGNILQVCLCSSNTVSLHQR 434
           FHC+ +  Q+  CS   VSLHQR
Sbjct: 370 FHCHYSEDQLMECSRKLVSLHQR 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,341,329
Number of Sequences: 28952
Number of extensions: 220329
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)