Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0979
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 28 1.4
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su... 27 1.9
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 3.3
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 4.4
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 26 5.8
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 26 5.8
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 5.8
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 7.7
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 7.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.7
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 453 KFFSEIPVSTTTSLNSSPTAAE 388
+F S+IP+ST TS +SSP E
Sbjct: 444 EFISQIPMSTETSSSSSPQPTE 465
>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 270
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -3
Query: 495 KLVTS--HEDVANAFEKFFSEIPVSTTTSL 412
K+V S ++A EK +SEIP+S TSL
Sbjct: 165 KIVMSMVRNEIATCAEKVYSEIPLSNATSL 194
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 136 KSGSTDDPSNYRPISVLPTLSKIFEKIILTQL 41
K+GS DD S +R L ++ EK+IL +L
Sbjct: 540 KNGSIDDFSVWRSAFANDALDRLLEKVILPKL 571
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 436 NLREKLFKSISHIFMTSYQFIIYFYENSWWLFLTFPLSLPMMFQV 570
N+R + +++S I+ +YQ +I E S +F P SL +F V
Sbjct: 410 NVRLQAIRTLSQIYNRAYQDLIDGVEYSIQMFSWIPSSLLEVFYV 454
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 638 VCLAAKSLHL--SDLIKNAPDKIKMTWNIIGRESGKVRNSHQE 516
V + K+LHL DL+KN D+ +TW ++ R + + QE
Sbjct: 175 VTSSEKALHLLCQDLLKNILDENSLTW-LVARHPLALLKTEQE 216
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 175 PDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKII 53
PDL + +F + + Y PI+VLP+LS++ + I
Sbjct: 344 PDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAI 384
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 466 SHIFMTSYQFIIYFYEN-SWWLFLTFPLSLPMMFQVIFILSGAF 594
S F +++FY +WW F+ L F+ F+ S AF
Sbjct: 41 STFFEGGIHSLLFFYPKRNWWFFIKMRY-LSFFFEFFFLFSFAF 83
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 614 HLSDLIKNAPDKIKMTWNIIGRESG 540
HL D I+N PD +I RESG
Sbjct: 397 HLQDCIRNGPDVHPGANYVIDRESG 421
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 477 EDVANAFEKFFSEIPVSTTTSLNSSPTAAEILLHKHANKCNE 352
E +FE F++ P TTT L + PT +I+ K+ E
Sbjct: 1059 EKQGQSFEIFYN-FPAYTTTILFAGPTQRKIVWEKNQTTAQE 1099
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 451 LFKSISHIFMTSYQFIIYFYENSWWLFLTFPLSLPMMFQV 570
L+K + ++ +FI+ W LF T LS+ Q+
Sbjct: 1324 LYKKFKDVISSNLEFIVEIKNTRWKLFDTATLSVQTTHQI 1363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,928
Number of Sequences: 5004
Number of extensions: 49627
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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