Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0979
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0339 - 24513699-24516827                                         29   2.6  
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668...    29   2.6  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    28   6.0  
01_06_0237 + 27770777-27771120,27771209-27771438,27771951-277720...    28   7.9  

>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 360 ICWHVYAIIFQLLWGMNLEKW*LKLE 437
           +C   + I+   +WG NL+KW L +E
Sbjct: 252 LCGRKFLIVLDDVWGQNLQKWKLLIE 277


>03_06_0253 - 32666152-32666360,32666443-32666632,32666764-32666862,
            32666999-32667094,32667408-32668361,32668683-32668901,
            32669282-32669491,32669617-32669879,32670041-32671717,
            32672702-32672852
          Length = 1355

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = -2

Query: 259  SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPT 80
            S I +++++ IA  L S+  + IR     D     + + +F   S  DPS Y  +++   
Sbjct: 952  SFIAEAIVEHIASTL-SVDTNAIRRKNLHDF----ESLKVFYGNSAGDPSTYSLVTIFDK 1006

Query: 79   LSKIFEKIILTQLLEHFNSNN 17
            L+   E      ++EHFN+ N
Sbjct: 1007 LASSPEYQQRAAMVEHFNAGN 1027


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -2

Query: 184  GVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILTQL 41
            G+ P+ +  + ++ + K     D  +YRPIS+   + K+  K ++ +L
Sbjct: 941  GLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRL 988


>01_06_0237 +
           27770777-27771120,27771209-27771438,27771951-27772092,
           27772266-27772281
          Length = 243

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 513 LIKIDDKLVTSHEDVANAFEKFFS 442
           L K+D K+ +S+ED++ A EK FS
Sbjct: 164 LRKVDLKMYSSYEDLSMALEKMFS 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,584
Number of Sequences: 37544
Number of extensions: 247688
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)