Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0979
(683 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 68 1e-11
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 68 1e-11
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 64 2e-10
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 64 2e-10
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 64 2e-10
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 64 2e-10
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 64 2e-10
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 62 9e-10
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 61 2e-09
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 60 3e-09
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 60 3e-09
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 59 6e-09
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 57 3e-08
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 55 8e-08
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 53 3e-07
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 51 2e-06
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 51 2e-06
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 51 2e-06
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 51 2e-06
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 50 4e-06
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 49 7e-06
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 48 9e-06
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 48 1e-05
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 44 1e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 41 0.001
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 34 0.16
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 67.7 bits (158), Expect = 1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = -2
Query: 271 VGNISKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGST-DDPSNYRPI 95
+ NIS LK++ H+V+I N C++ G FP K +K++P+ K G D+P +YRPI
Sbjct: 484 IPNIS--LKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPI 541
Query: 94 SVLPTLSKIFEKIILTQLLEHFNSNNLL 11
S+L LSKI EK+I +L++ + +N L
Sbjct: 542 SLLSGLSKILEKLIKLRLVKFLDIHNTL 569
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 67.7 bits (158), Expect = 1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = -2
Query: 271 VGNISKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGST-DDPSNYRPI 95
+ NIS LK++ H+V+I N C++ G FP K +K++P+ K G D+P +YRPI
Sbjct: 432 IPNIS--LKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPI 489
Query: 94 SVLPTLSKIFEKIILTQLLEHFNSNNLL 11
S+L LSKI EK+I +L++ + +N L
Sbjct: 490 SLLSGLSKILEKLIKLRLVKFLDIHNTL 517
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/74 (39%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSG-STDDPSNYRPISVLP 83
++++K++ +L+ I+N +R G +PD KH++V + K G S +DP +YRPIS+L
Sbjct: 390 NQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLS 449
Query: 82 TLSKIFEKIILTQL 41
LSK+FE+++L +L
Sbjct: 450 GLSKMFERLLLKRL 463
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/74 (39%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSG-STDDPSNYRPISVLP 83
++++K++ +L+ I+N +R G +PD KH++V + K G S +DP +YRPIS+L
Sbjct: 506 NQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLS 565
Query: 82 TLSKIFEKIILTQL 41
LSK+FE+++L +L
Sbjct: 566 GLSKMFERLLLKRL 579
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/74 (39%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSG-STDDPSNYRPISVLP 83
++++K++ +L+ I+N +R G +PD KH++V + K G S +DP +YRPIS+L
Sbjct: 506 NQLIKALPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLS 565
Query: 82 TLSKIFEKIILTQL 41
LSK+FE+++L +L
Sbjct: 566 GLSKMFERLLLKRL 579
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/74 (39%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSG-STDDPSNYRPISVLP 83
++++K++ +L+ I+N +R G +PD KH++V + K G S +DP +YRPIS+L
Sbjct: 468 NQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLS 527
Query: 82 TLSKIFEKIILTQL 41
LSK+FE+++L +L
Sbjct: 528 GLSKMFERLLLKRL 541
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/74 (39%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSG-STDDPSNYRPISVLP 83
++++K++ +L+ I+N +R G +PD KH++V + K G S +DP +YRPIS+L
Sbjct: 506 NQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLS 565
Query: 82 TLSKIFEKIILTQL 41
LSK+FE+++L +L
Sbjct: 566 GLSKMFERLLLKRL 579
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 61.7 bits (143), Expect = 9e-10
Identities = 28/76 (36%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSG-STDDPSNYRPISVLP 83
++++K++ +L+ I+N +R G +P+ KH++V + K G S ++P +YRPIS+L
Sbjct: 506 NQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISLLS 565
Query: 82 TLSKIFEKIILTQLLE 35
LSKIFE+++L +L +
Sbjct: 566 GLSKIFERLLLKRLFK 581
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 60.9 bits (141), Expect = 2e-09
Identities = 27/74 (36%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSG-STDDPSNYRPISVLP 83
++++K++ +L+ I+N +R G +P+ KH++V + K G S+++P +YRPIS+L
Sbjct: 518 NQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSSNEPKSYRPISLLS 577
Query: 82 TLSKIFEKIILTQL 41
LSK+FE+++L +L
Sbjct: 578 GLSKMFERLLLKRL 591
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 60.1 bits (139), Expect = 3e-09
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTD-DPSNYRPISVLPTLSKIFEKIILTQ 44
H+ +FN + G FP K S ++ + K G PS+YRPIS+L LSK+FEK++L +
Sbjct: 470 HICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLR 529
Query: 43 LLEHFNSNNLL 11
+ H NN L
Sbjct: 530 ISPHLRINNTL 540
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 60.1 bits (139), Expect = 3e-09
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTD-DPSNYRPISVLPTLSKIFEKIILTQ 44
H+ +FN + G FP K S ++ + K G PS+YRPIS+L LSK+FEK++L +
Sbjct: 470 HICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLR 529
Query: 43 LLEHFNSNNLL 11
+ H NN L
Sbjct: 530 ISPHLRINNTL 540
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 58.8 bits (136), Expect = 6e-09
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTD-DPSNYRPISVLP 83
++ ++ + D LV IFN + G FP K + +I + K+G T D +YRPIS+LP
Sbjct: 265 NRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPISLLP 324
Query: 82 TLSKIFEKIILTQLL 38
+L KI E++IL +LL
Sbjct: 325 SLGKIMERLILNRLL 339
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 56.8 bits (131), Expect = 3e-08
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = -2
Query: 253 ILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTD--DPSNYRPISVLPT 80
I K+V I HL S+F+ CIR G FP K +V+ L K D +PS+YR I +LP
Sbjct: 461 ICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPV 520
Query: 79 LSKIFEKIILTQLLE 35
K+ E I++ ++ E
Sbjct: 521 FGKVLEAIMVNRVRE 535
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 55.2 bits (127), Expect = 8e-08
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = -2
Query: 259 SKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTD-DPSNYRPISVLP 83
++ ++ + D L IFN + G FP K + +I + K+G T D +YRP S+LP
Sbjct: 463 NRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLP 522
Query: 82 TLSKIFEKIILTQLL 38
+L KI E++IL +LL
Sbjct: 523 SLGKIMERLILNRLL 537
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 53.2 bits (122), Expect = 3e-07
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDD-PSNYRPISVLPTLSKIFEKIILTQ 44
++ +FN + G FP K K+I + K G S+YRPIS+L +SK+FEK +L +
Sbjct: 472 YITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIR 531
Query: 43 LLEHFNSNNLL 11
L +H +N++
Sbjct: 532 LNQHQTYHNII 542
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 50.8 bits (116), Expect = 2e-06
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSN-YRPISVLPTLSKIFEKIILTQ 44
+L+ I+N+ +R G FP+ KH+ + + K G + N YRPIS+L LSK+ E+I+L +
Sbjct: 75 YLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKR 134
Query: 43 LLE 35
L +
Sbjct: 135 LYD 137
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 50.8 bits (116), Expect = 2e-06
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSN-YRPISVLPTLSKIFEKIILTQ 44
+L+ I+N+ +R G FP+ KH+ + + K G + N YRPIS+L LSK+ E+I+L +
Sbjct: 522 YLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKR 581
Query: 43 LLE 35
L +
Sbjct: 582 LYD 584
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 50.8 bits (116), Expect = 2e-06
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSN-YRPISVLPTLSKIFEKIILTQ 44
+L+ I+N+ +R G FP+ KH+ + + K G + N YRPIS+L LSK+ E+I+L +
Sbjct: 522 YLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKR 581
Query: 43 LLE 35
L +
Sbjct: 582 LYD 584
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = -2
Query: 253 ILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGST-DDPSNYRPISVLPTL 77
+LK++ + L+ IFN + G +P + + +IP+ K D ++YRPIS+L L
Sbjct: 463 MLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPISKPNKPPSDINSYRPISLLSCL 522
Query: 76 SKIFEKIILTQLLEHFNSNNLL-HNK 2
K EKII +L +NL+ HN+
Sbjct: 523 GKTLEKIIAQRLTWFIKRHNLISHNQ 548
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 49.6 bits (113), Expect = 4e-06
Identities = 25/66 (37%), Positives = 37/66 (56%)
Frame = -2
Query: 208 IFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILTQLLEHF 29
+FN + G FP K S +I + K +YRPIS+L LSK+FEK +L ++ H
Sbjct: 16 LFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQPSYRPISLLTCLSKLFEKGLLLRISPHL 75
Query: 28 NSNNLL 11
++N L
Sbjct: 76 KTHNTL 81
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 48.8 bits (111), Expect = 7e-06
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTD-DPSNYRPISVLPTLSKIFEKIILTQ 44
++ +FN +R FP K + + K G + +P++YRPIS+LP++SK+FE++I +
Sbjct: 474 YITLVFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVR 533
Query: 43 LL 38
++
Sbjct: 534 IV 535
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 48.4 bits (110), Expect = 9e-06
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDD-PSNYRPISVLPTLSKIFEKIILTQ 44
+L I+N +R FP K + ++ + K G ++ P +YRPIS+L +LSK++E++I +
Sbjct: 475 YLALIYNAILRVQFFPKQWKMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANR 534
Query: 43 LLEHFNSNNLL 11
L + +L
Sbjct: 535 LNDIMTERRIL 545
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 48.0 bits (109), Expect = 1e-05
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = -2
Query: 220 HLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSN-YRPISVLPTLSKIFEKIILTQ 44
+L+ I+N+ +R G FP+ KH+ + + K G + N YRPIS+L LSK+ E+I+ +
Sbjct: 522 YLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILPKR 581
Query: 43 LLE 35
L +
Sbjct: 582 LYD 584
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -2
Query: 205 FNDCIRCGVFPDLMKHSKVIPLFKS-GSTDDPSNYRPISVLPTLSKIFEKIILTQL 41
F C+ GVFP K K++ L K G + P +YRP+ +L + K+FE+I+ ++
Sbjct: 445 FQQCLLDGVFPKRWKKMKLVLLLKGKGPANVPRSYRPLCLLDIVGKLFERILYARI 500
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -2
Query: 217 LVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDP-SNYRPISVLPTLSKIFEKIILTQL 41
+ +FN+ + P K S +IP+ K + S+YRPIS+ ++KI +KII +L
Sbjct: 471 ITKLFNEIFNSHI-PQAYKTSLIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRL 529
Query: 40 LEHFNSNNLLHNK 2
NNL+++K
Sbjct: 530 WWLVTYNNLINDK 542
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 34.3 bits (75), Expect = 0.16
Identities = 19/74 (25%), Positives = 38/74 (51%)
Frame = -2
Query: 247 KSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKI 68
KS ++ + ++ I N + CG P ++ ++ + + K+ + P ++RPISV L +
Sbjct: 368 KSAREVPSGIMLRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQ 427
Query: 67 FEKIILTQLLEHFN 26
I+ T+L N
Sbjct: 428 LNAILATRLNSSIN 441
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,268,998
Number of Sequences: 53049
Number of extensions: 460165
Number of successful extensions: 1181
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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