Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0979
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    48   8e-06
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    48   8e-06
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    48   8e-06
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    38   0.009
Z81142-5|CAB03507.1|  319|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL110485-17|CAB60365.1|  272|Caenorhabditis elegans Hypothetical...    29   4.1  
AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical...    29   4.1  
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF040660-4|AAC71145.1|  323|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = -2

Query: 250 LKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSK 71
           LKS  D +   +   FN  +     P   K SK   +FK G  ++  NYRPI +LP L K
Sbjct: 404 LKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYK 463

Query: 70  IFEKIILTQL 41
           +F K +L ++
Sbjct: 464 VFTKCLLNRM 473


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = -2

Query: 250 LKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSK 71
           LKS  D +   +   FN  +     P   K SK   +FK G  ++  NYRPI +LP L K
Sbjct: 575 LKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYK 634

Query: 70  IFEKIILTQL 41
           +F K +L ++
Sbjct: 635 VFTKCLLNRM 644


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = -2

Query: 250 LKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSK 71
           LKS  D +   +   FN  +     P   K SK   +FK G  ++  NYRPI +LP L K
Sbjct: 314 LKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYK 373

Query: 70  IFEKIILTQL 41
           +F K +L ++
Sbjct: 374 VFTKCLLNRM 383


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = -2

Query: 217 LVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDP---SNYRPISVLPTLSKIFEKIILT 47
           L  ++N  +   + PD  K + VI + K     DP   S+YRPIS+L  ++K+ EK IL 
Sbjct: 367 LAYLYNVSLSTNIIPDKWKKANVIMIPKPKK--DPAIASSYRPISLLSPIAKLLEKAILK 424

Query: 46  QLLEHFNS 23
           ++     S
Sbjct: 425 RIKNSIES 432


>Z81142-5|CAB03507.1|  319|Caenorhabditis elegans Hypothetical
           protein ZK1037.8 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 463 ISHIFMTSYQFIIYFYENSWWLFLTFPLSLPMMF 564
           +S IFM   ++ + F +NS+W +L +P  +   F
Sbjct: 105 VSIIFMFENRYFVLFGQNSFWKYLRYPFLILNFF 138


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 516 ILIKIDDKLVTSHEDVANAFEKFFSEIPVSTTTSLNSSPTAAEILLHKH 370
           I  ++ +   + H+DVA AF    S+I + T +   S+  +  +  H+H
Sbjct: 735 IYAQVSENQPSEHDDVAKAFMLLDSDIHLKTKSRKRSTQNSVAVGSHRH 783


>AL110485-17|CAB60365.1|  272|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22b protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 74  TQRREY*NRSIVRGVIST--TRFKKRNHFTMFH*VRKYTTPNTVIKNTNKMRSNNVYYRL 247
           T RR +  +S  RG +S+  TRF         +  RK +   T    T++ + NN YY +
Sbjct: 5   TTRRSHSEKSSSRGSMSSPPTRFYPSEDSESIYSTRKCSKRTTTTATTDEEKPNNSYY-I 63

Query: 248 QNLTDIPHKSAVFF 289
            ++ D   +  V F
Sbjct: 64  DDIYDSTEEYQVTF 77


>AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22a protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 74  TQRREY*NRSIVRGVIST--TRFKKRNHFTMFH*VRKYTTPNTVIKNTNKMRSNNVYYRL 247
           T RR +  +S  RG +S+  TRF         +  RK +   T    T++ + NN YY +
Sbjct: 5   TTRRSHSEKSSSRGSMSSPPTRFYPSEDSESIYSTRKCSKRTTTTATTDEEKPNNSYY-I 63

Query: 248 QNLTDIPHKSAVFF 289
            ++ D   +  V F
Sbjct: 64  DDIYDSTEEYQVTF 77


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 514 NSWWLFLTFPLSLPMMFQVIFILSGAFFIKSLKCKDFAAKQTFL 645
           + +W  + F    P+MF + FI  G FF  S    + +A  T L
Sbjct: 375 HEYWFGVAFRCFYPVMFVLYFIFGGTFFAVSRLITNRSAWNTAL 418


>AF040660-4|AAC71145.1|  323|Caenorhabditis elegans Hypothetical
           protein W05G11.5 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 573 DDLEHHW*RKWKSQK*PPRILIKIDDKLVTSHEDVANAFEKFFSEIPVSTTT 418
           D LE  W  K  S   PP    K +  +  SH  V ++ ++F +E+     T
Sbjct: 216 DKLESMWGSKVHSANCPPNKARKTNRLVCVSHSSVLSSLKQFKTELRAKVAT 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,153
Number of Sequences: 27780
Number of extensions: 264631
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)