Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0979
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.89 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.89 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.89 
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   4.7  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 17/73 (23%), Positives = 26/73 (35%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTRFKKRNHFTMFH*VRKYTTPNTVIKNTNKMRSN 229
           + N +KN  + R+Y   S  R      R K + H  +      Y   N   K        
Sbjct: 46  EQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYK 105

Query: 230 NVYYRLQNLTDIP 268
            +YY +  +  IP
Sbjct: 106 KLYYNINYIEQIP 118


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 17/73 (23%), Positives = 26/73 (35%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTRFKKRNHFTMFH*VRKYTTPNTVIKNTNKMRSN 229
           + N +KN  + R+Y   S  R      R K + H  +      Y   N   K        
Sbjct: 46  EQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYK 105

Query: 230 NVYYRLQNLTDIP 268
            +YY +  +  IP
Sbjct: 106 KLYYNINYIEQIP 118


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 17/73 (23%), Positives = 26/73 (35%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTRFKKRNHFTMFH*VRKYTTPNTVIKNTNKMRSN 229
           + N +KN  + R+Y   S  R      R K + H  +      Y   N   K        
Sbjct: 46  EQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYR 105

Query: 230 NVYYRLQNLTDIP 268
            +YY +  +  IP
Sbjct: 106 KLYYNINYIEQIP 118


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTR--FKKRNHFTMFH*VRKYTTPNTVIKNTNKMR 223
           + N +KN  + ++Y   S  R    T R   K+    +      KY+  N    N N   
Sbjct: 46  EQNSYKNEREYQKYRETSKERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNY 105

Query: 224 SNNVYYRLQNLTDIP 268
               YY + N+  IP
Sbjct: 106 KKLQYYNIINIEQIP 120


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTR--FKKRNHFTMFH*VRKYTTPNTVIKNTNKMR 223
           + N +KN  + ++Y   S  R    T R   K+    +      KY+  N    N N   
Sbjct: 46  EQNSYKNEREYQKYRETSKERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNY 105

Query: 224 SNNVYYRLQNLTDIP 268
               YY + N+  IP
Sbjct: 106 KKLQYYNIINIEQIP 120


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTR--FKKRNHFTMFH*VRKYTTPNTVIKNTNKMR 223
           + N +KN  + ++Y   S  R    T R   K+    +      KY+  N    N N   
Sbjct: 46  EQNSYKNEREYQKYRETSKERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNY 105

Query: 224 SNNVYYRLQNLTDIP 268
               YY + N+  IP
Sbjct: 106 KKLQYYNIINIEQIP 120


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTR--FKKRNHFTMFH*VRKYTTPNTVIKNTNKMR 223
           + N +KN  + ++Y   S  R    T R   K+    +      KY+  N    N N   
Sbjct: 46  EQNSYKNEREYQKYRETSKERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNY 105

Query: 224 SNNVYYRLQNLTDIP 268
               YY + N+  IP
Sbjct: 106 KKLQYYNIINIEQIP 120


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTR--FKKRNHFTMFH*VRKYTTPNTVIKNTNKMR 223
           + N +KN  + ++Y   S  R    T R   K+    +      KY+  N    N N   
Sbjct: 46  EQNSYKNEREYQKYRETSKERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNY 105

Query: 224 SNNVYYRLQNLTDIP 268
               YY + N+  IP
Sbjct: 106 KKLQYYNIINIEQIP 120


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTR--FKKRNHFTMFH*VRKYTTPNTVIKNTNKMR 223
           + N +KN  + ++Y   S  R    T R   K+    +      KY+  N    N N   
Sbjct: 46  EQNSYKNEREYQKYRETSKERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNY 105

Query: 224 SNNVYYRLQNLTDIP 268
               YY + N+  IP
Sbjct: 106 KKLQYYNIINIEQIP 120


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 50  QNNFFKNFTQRREY*NRSIVRGVISTTR--FKKRNHFTMFH*VRKYTTPNTVIKNTNKMR 223
           + N +KN  + ++Y   S  R    T R   K+    +      KY+  N    N N   
Sbjct: 46  EQNSYKNEREYQKYRETSKERSRDRTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNY 105

Query: 224 SNNVYYRLQNLTDIP 268
               YY + N+  IP
Sbjct: 106 KKLQYYNIINIEQIP 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,112
Number of Sequences: 438
Number of extensions: 3374
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)