Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0979
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At1g44414.1 68414.m05112 hypothetical protein                          29   2.2  
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    29   2.9  
At5g64470.2 68418.m08100 expressed protein similar to unknown pr...    28   6.6  
At5g64470.1 68418.m08099 expressed protein similar to unknown pr...    28   6.6  
At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransfer...    27   8.8  
At4g09020.1 68417.m01489 isoamylase, putative / starch debranchi...    27   8.8  
At1g67730.1 68414.m07729 b-keto acyl reductase, putative (GLOSSY...    27   8.8  

>At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 367

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -2

Query: 208 IFNDCIRCGVFPDLMKHSKVI-PLFKSGSTDD 116
           I+N+ ++CG+ PDL+ ++ VI  L +SG+  +
Sbjct: 270 IYNEMVQCGIEPDLLSYTAVIDSLGRSGNVKE 301


>At1g44414.1 68414.m05112 hypothetical protein
          Length = 101

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 196 CIRCGVFPDLMKHSKVIPLF 137
           CIRCG   DL+++ KVI LF
Sbjct: 24  CIRCGSQADLVEYDKVIKLF 43


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/60 (23%), Positives = 37/60 (61%)
 Frame = -2

Query: 256 KILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTL 77
           +++ ++I++ +  +++I +DC R   FPD+    + + + K+G  + P+++R  + + TL
Sbjct: 686 EVIPTLINLASLKIINI-HDCPRLKSFPDVPTSLEELVIEKTGVQELPASFRHCTGVTTL 744


>At5g64470.2 68418.m08100 expressed protein similar to unknown
           protein (gb|AAD15463.1)
          Length = 407

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 472 IFMTSYQFIIYFYENSWWLFLTFPLSLPMMF 564
           I +TS+  ++ F    WW +  FP   P++F
Sbjct: 215 INVTSFYDVLIFNSGHWWGYDKFPKETPLVF 245


>At5g64470.1 68418.m08099 expressed protein similar to unknown
           protein (gb|AAD15463.1)
          Length = 325

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 472 IFMTSYQFIIYFYENSWWLFLTFPLSLPMMF 564
           I +TS+  ++ F    WW +  FP   P++F
Sbjct: 215 INVTSFYDVLIFNSGHWWGYDKFPKETPLVF 245


>At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase  wax synthase - Simmondsia
           chinensis, PID:g5020219  similar to wax synthase
           [gi:5020219] from Simmondsia chinensis
          Length = 435

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 526 LFLTFPLSLPMMFQVIFILSGAFFIKSLKCK 618
           LF+ +PL L ++ +++  L  AFF  +L C+
Sbjct: 154 LFVLYPLHLYLVLEILLKLFNAFFSIALDCE 184


>At4g09020.1 68417.m01489 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase isoform 3
           [Solanum tuberosum] GI:27728149, isoamylase [Oryza
           sativa] GI:3252794; contains Pfam profiles PF00128:
           Alpha amylase catalytic domain, PF02922: Isoamylase
           N-terminal domain
          Length = 764

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 137 KKRNHFTMFH*VRKYTTPNTVIKNTNKMRSNNVYYRLQNLTDIPHKSAVF 286
           KK+NHF  F  V K+   + V+K+ N +    + +   N  +   K   F
Sbjct: 641 KKQNHFRFFSEVIKFRHSHHVLKHENFLTQGEITWHEDNWDNSESKFLAF 690


>At1g67730.1 68414.m07729 b-keto acyl reductase, putative (GLOSSY8)
           similar to b-keto acyl reductase GI:2586127 from
           [Hordeum vulgare]
          Length = 318

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 502 YFYENSWWLFLTFPLSLPMMFQVIFILSGAFFIKSLK 612
           YF     WL + F L    +F+ IF L  +F+I  L+
Sbjct: 6   YFKSQPTWLLILFVLGSISIFKFIFTLLRSFYIYFLR 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,487,277
Number of Sequences: 28952
Number of extensions: 232383
Number of successful extensions: 673
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)