Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0978
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.057
UniRef50_Q7RAR5 Cluster: Chloroquine resistance marker protein; ...    33   5.0  
UniRef50_Q1J2S1 Cluster: Cupin 2, conserved barrel; n=1; Deinoco...    33   8.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.9 bits (89), Expect = 0.057
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +1

Query: 58  ILLRCVDXLTAHLVLSGYWXP 120
           +LLR VD LTAHLVLSGYW P
Sbjct: 155 LLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q7RAR5 Cluster: Chloroquine resistance marker protein; n=11;
            Plasmodium (Vinckeia)|Rep: Chloroquine resistance marker
            protein - Plasmodium yoelii yoelii
          Length = 3582

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 452  CKRSITSLKLERMIALR*I*HDGDN--YPPVSTYNASSTINNYANHNYSLHDVF-HSRLA 622
            C+ SI ++ L   I  R +  DG+   YP +  YN S T N Y  HN   H  + H+ L 
Sbjct: 3086 CELSIYNINLFSCIYXRRLIKDGETLLYPLIYNYNNSHTSNFYNIHNLENHHEYNHNNLF 3145

Query: 623  E 625
            E
Sbjct: 3146 E 3146


>UniRef50_Q1J2S1 Cluster: Cupin 2, conserved barrel; n=1;
           Deinococcus geothermalis DSM 11300|Rep: Cupin 2,
           conserved barrel - Deinococcus geothermalis (strain DSM
           11300)
          Length = 338

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -3

Query: 356 PLPIKSVHFN**NSFKTRTGGLVVGPSCESARVGPPPRLFL-PXSSNAFRFEGRGSRCNY 180
           P+P  + H    ++F    G + +    ES  + P    ++ P +++A++F G     NY
Sbjct: 59  PIPFHA-HREARDTFFVTRGQMQLWADGESRILNPGDFAYVAPGTAHAYQFLG-----NY 112

Query: 179 TETLELISQGGWRTYVV 129
           TET+ +I+ GGW  + V
Sbjct: 113 TETVGMITPGGWEEFFV 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,141,230
Number of Sequences: 1657284
Number of extensions: 13538256
Number of successful extensions: 26651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26632
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)