Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0978
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    30   0.021
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    25   0.77 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.4  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   7.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.5  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 29.9 bits (64), Expect = 0.021
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 278 SCESARVGPPPRLFLPXSSNAFRFEGRGSRCNYTETLELISQGGWR 141
           S  +A++G P +     + N+ ++ G      Y E +EL  +GGW+
Sbjct: 271 SASNAKLGAPVK----GAGNSGKYTGEAGMLGYNEIVELQKEGGWK 312


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 221 NAFRFEGRGSRCNYTETLELISQGGWRT 138
           +A R+ G      Y E +E  + GGW T
Sbjct: 290 DAGRYTGERGMMGYNEIVEAQNAGGWTT 317


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/54 (20%), Positives = 23/54 (42%)
 Frame = +3

Query: 309 FKRVLSVKVNRFYRQRLDVCLWRLRHPWATVTLAIFYFDVWNRSHNYIVKGLSH 470
           F +  + ++ R +RQ+  +      H  + + L      +W ++H Y  K   H
Sbjct: 47  FSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQNHRYKTKRAQH 100


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 105 WLLXPIDIYNVSAPPTLRYK 164
           WL  P  + N   P +LR+K
Sbjct: 7   WLTPPHSLGNTVTPVSLRFK 26


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 675  QSKKETMYLAPLYY 634
            Q  K+T ++APLYY
Sbjct: 1595 QWDKQTGHVAPLYY 1608


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,956
Number of Sequences: 336
Number of extensions: 3551
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)