Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0978
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0747 - 24119049-24119878,24120010-24120096,24120180-241202...    29   3.5  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    28   8.0  

>06_03_0747 -
           24119049-24119878,24120010-24120096,24120180-24120285,
           24120400-24120593,24120663-24120906,24120982-24121060,
           24121148-24121227,24122181-24122276,24122372-24122443,
           24122534-24122731,24123050-24123252,24123376-24123895
          Length = 902

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 405 LAIFYFDVWNRSHNYIVKGLSHL*NWN 485
           +A F+FDV N SH +   G S + +W+
Sbjct: 365 IATFFFDVVNSSHTFATGGTSTMEHWH 391


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 299 GGLVVGPSCESARVGPPP 246
           GG+ +GP  E   VGPPP
Sbjct: 534 GGIAIGPLGEEGLVGPPP 551


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,493,040
Number of Sequences: 37544
Number of extensions: 376673
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)