Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0978
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34917| Best HMM Match : zf-C2H2 (HMM E-Value=3.9e-37)               29   4.7  
SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_15457| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)                 28   6.2  

>SB_34917| Best HMM Match : zf-C2H2 (HMM E-Value=3.9e-37)
          Length = 288

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 680 KNSQKKKRCT*HHFIILALPRGVNEKHRVMNNYDLR 573
           KN+  +  CT  H  ++  P G+ E HR  N Y ++
Sbjct: 70  KNNTNRSNCTAVHAQVI--PLGIEETHRTQNTYPVK 103


>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 492 IMRSSFKDVIDLLQYNCDFDSIHQNRK*QVSRSPMGVANARDTRRASAYKIC 337
           +M  ++ DV+ L + +C     HQ +  +++ +P+   N R T    A ++C
Sbjct: 128 VMGDNYGDVVHLFERDCSVQRRHQ-KVIEIAPAPLLDENIRQTLTEDAVRLC 178


>SB_15457| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
          Length = 295

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 492 IMRSSFKDVIDLLQYNCDFDSIHQNRK*QVSRSPMGVANARDTRRASAYKIC 337
           +M  ++ DV+ L + +C     HQ +  +++ +P+   N R T    A ++C
Sbjct: 129 VMGDNYGDVVHLFERDCSVQRRHQ-KVIEIAPAPLLDENIRQTLTEDAVRLC 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,526,775
Number of Sequences: 59808
Number of extensions: 439857
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)