Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0978
         (691 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U44794-1|AAB50186.1|  124|Homo sapiens Ig kappa L-chain variable...    31   5.1  
AF194411-1|AAL40181.1|  119|Homo sapiens immunoglobulin kappa li...    31   5.1  
DQ100626-1|AAZ08633.1|   92|Homo sapiens immunoglobulin kappa li...    30   6.8  
U21248-1|AAA88864.1|  108|Homo sapiens immunoglobulin kappa ligh...    30   8.9  
AJ236552-1|CAB43013.1|  107|Homo sapiens anti-HCV E2 antibody, V...    30   8.9  

>U44794-1|AAB50186.1|  124|Homo sapiens Ig kappa L-chain variable
           region protein.
          Length = 124

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = -3

Query: 263 RVGPPPRLFLPXSSNAF-----RFEGRGSRCNYTETLELISQGGWRTYVVDVYG 117
           R G  PRL +  +SN       RF G GS  ++T T+  +  G +  Y    YG
Sbjct: 60  RPGQAPRLLIYGASNRATGIPDRFSGSGSGTDFTLTISRLEPGDFAVYYCQQYG 113


>AF194411-1|AAL40181.1|  119|Homo sapiens immunoglobulin kappa light
           chain variable region protein.
          Length = 119

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -3

Query: 257 GPPPRLFLPXSSNAF-----RFEGRGSRCNYTETLELISQGGWRTYVVDVYGXQ*PL 102
           G  PRL +  +SN       RF G GS  N+T T+  +    +  Y    YG   PL
Sbjct: 48  GQAPRLLMYGASNRATGIPDRFSGSGSGTNFTLTISRLEPEDFAVYYCQQYGRSPPL 104


>DQ100626-1|AAZ08633.1|   92|Homo sapiens immunoglobulin kappa light
           chain variable region protein.
          Length = 92

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -3

Query: 257 GPPPRLFLPXSSNAF-----RFEGRGSRCNYTETLELISQGGWRTYVVDVYG 117
           G PPRL +  +SN       RF G GS  ++T T+  +    +  Y    YG
Sbjct: 26  GQPPRLLIHGASNRATGTPDRFSGSGSETDFTLTVSRLEPEDFAVYYCQQYG 77


>U21248-1|AAA88864.1|  108|Homo sapiens immunoglobulin kappa light
           chain protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -3

Query: 263 RVGPPPRLFLPXSSNAF-----RFEGRGSRCNYTETLELISQGGWRTYVVDVYGXQ*PL 102
           + G  PRL +  +SN       RF G GS  ++T T+  +    +  Y    YG   P+
Sbjct: 39  KAGQAPRLLIHDASNRAPGIPARFSGSGSGTDFTLTISRLESEDFAVYYCQYYGDSPPI 97


>AJ236552-1|CAB43013.1|  107|Homo sapiens anti-HCV E2 antibody, VK
           segment protein.
          Length = 107

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -3

Query: 257 GPPPRLFLPXSSNAF-----RFEGRGSRCNYTETLELISQGGWRTYVVDVYG 117
           G PPRL +  +SN       RF G GS  ++T T+  +    +  Y    YG
Sbjct: 41  GQPPRLLIYGASNRATGIPDRFSGSGSGTDFTLTISRLESEDFAVYYCQQYG 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,716,939
Number of Sequences: 237096
Number of extensions: 2147633
Number of successful extensions: 4242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4242
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)