Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0978
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine...    29   3.1  
Z81532-5|CAE17816.1|  101|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine
           receptor protein 6 protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 434 IPYIKIENSKCHGRPWVSQTPETHV 360
           +P I + N+  HG PWVS+T + HV
Sbjct: 89  LPDIILYNN-AHGSPWVSETTQVHV 112


>Z81532-5|CAE17816.1|  101|Caenorhabditis elegans Hypothetical
           protein F36F2.8 protein.
          Length = 101

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 337 TDFIGRGSTCVSGVCDTHGRP*HLLFSILMY 429
           + F  R   C++G C+ H    H LF   MY
Sbjct: 52  SQFCPRNFKCINGNCEKHNGSSHFLFGSAMY 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,804,362
Number of Sequences: 27780
Number of extensions: 325022
Number of successful extensions: 585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)