Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0976
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.57 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.57 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.99 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   5.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   5.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 212 LRTPSLSYHHVGYTLDITN-AHSRPRSQKPN*LCYDQQKV*KLYQEG 349
           L T S++ HH+G+ +   +  H +P  Q+ + + Y  Q+   ++Q+G
Sbjct: 157 LTTQSMNNHHMGHHMQEQHPQHHQPHHQQQH-MMYGGQQGANMHQQG 202


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 212 LRTPSLSYHHVGYTLDITN-AHSRPRSQKPN*LCYDQQKV*KLYQEG 349
           L T S++ HH+G+ +   +  H +P  Q+ + + Y  Q+   ++Q+G
Sbjct: 159 LTTQSMNNHHMGHHMQEQHPQHHQPHHQQQH-MMYGGQQGANMHQQG 204


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 494 DPHRYNQWANDRRTETTASDLDTWTSLKR 580
           DPH +N  +ND  ++       + T LKR
Sbjct: 215 DPHNFNMISNDDESDIIQGGYISVTGLKR 243


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 156 VSKAISTSHSRSNGRTHLRIHVTHNDN 76
           +S ++STS+S S   T+L  +   N+N
Sbjct: 322 ISASLSTSNSNSPSSTNLIQNEASNEN 348


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 156 VSKAISTSHSRSNGRTHLRIHVTHNDN 76
           +S ++STS+S S   T+L  +   N+N
Sbjct: 111 ISASLSTSNSNSPSSTNLIQNEASNEN 137


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 156 VSKAISTSHSRSNGRTHLRIHVTHNDN 76
           +S ++STS+S S   T+L  +   N+N
Sbjct: 111 ISASLSTSNSNSPSSTNLIQNEASNEN 137


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 189 KLNKRITSIVSVSKAISTSHSRSNGRTHLRIHVTH 85
           KLN  I  + ++   ++ S  R +  + LR+  TH
Sbjct: 43  KLNSYIGELATLVPMVARSAKRMDKTSILRLAATH 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,806
Number of Sequences: 336
Number of extensions: 4037
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)