Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0976
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    27   3.3  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   4.3  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    25   7.6  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   7.6  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   7.6  
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    25   7.6  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   10.0 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   10.0 

>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 461 YVWPSIHSLWLQLLQLACYVYHHWVM 384
           ++   + +L LQLL    +++HHW +
Sbjct: 170 FLQSEVKTLMLQLLAATAFMHHHWYL 195


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 249 IHWTSPMHTVDRVVRNQIDYVMINRRYRNCI 341
           IH    +   D  V + ID VM NRRY NC+
Sbjct: 211 IHNADILIREDITVDDFIDLVMGNRRYINCL 241


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 401 RRSMQAEEVAAKENGWKAKRTEAC*ARH 484
           +R++ AEE  A  N WK   TEA  ARH
Sbjct: 126 QRAVTAEEGKALANEWKCAWTEAS-ARH 152


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -1

Query: 311 NIVNLVSDYAVYCVHW*CPVYSRRGGSLKKVFAIMRLLSWQNSISVSPLSFLFPRP*APV 132
           NI+  +S    YC+ W            KK+     L++WQN+    P S  FPR   P+
Sbjct: 130 NIIYEISQSGYYCI-W---------SHSKKMLPYQALVNWQNAYGGLPAS-QFPR--MPI 176

Query: 131 TPGVMV 114
           + G+ +
Sbjct: 177 SGGITI 182


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 360 PGADIGSDHNPVVVDVACKLKKLQPKRMD 446
           PG D G+  N  ++D+  ++K L+P  +D
Sbjct: 420 PGIDTGTLLNNQIIDLCVRVKALRPFSVD 448


>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 322 EGIEIVSRRRKPTPVQTLGQII 387
           EG++I++R R   P+Q LGQ +
Sbjct: 21  EGMKILARDRPENPLQFLGQFL 42


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 458 VWPSIHSLWLQLLQLACYVYHHWVMI*PNVCTGVGLRLLDTISIPSV 318
           ++ +I  ++L  L++  Y+ H    I P VC    L LL  + IP++
Sbjct: 24  IFEAIFEVFLHFLKIPVYMTHLGFPITPTVCLIEMLGLLLLLLIPAL 70


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 466 SLLSPTHERRPTPL*SMGQRSSH 534
           S+ SPT E    PL SM  RSSH
Sbjct: 405 SVTSPTFEVAARPLTSMDVRSSH 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,142
Number of Sequences: 5004
Number of extensions: 63773
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)