Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0976
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783...    33   0.21 
06_01_1068 + 8715714-8716799,8716899-8717159                           29   3.4  
01_05_0569 + 23343861-23344751,23344841-23344984,23345071-233453...    29   3.4  
08_01_0658 - 5682425-5682832,5682878-5683000                           29   4.5  
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492...    28   5.9  
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    28   5.9  

>01_03_0017 +
           11677029-11677100,11677992-11678030,11678169-11678341,
           11679068-11679284,11679518-11679688,11679781-11679941,
           11680025-11681069,11681320-11681466,11681547-11681774,
           11681863-11682020,11682124-11682493
          Length = 926

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 453 PNVRKLAEPDTRAKTHTAIINGPTIVALKPLP--LTSTRG 566
           P + +L + D R  T  A IN P +V++ P P  L S RG
Sbjct: 361 PTITQLVQSDKRTHTANATINSPELVSMSPKPDALKSVRG 400


>06_01_1068 + 8715714-8716799,8716899-8717159
          Length = 448

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 554 GQRQWFQCDDRWPIDYSGV 498
           G+R   + DD WP DYSGV
Sbjct: 346 GERPHVKLDDSWPRDYSGV 364


>01_05_0569 +
           23343861-23344751,23344841-23344984,23345071-23345309,
           23346096-23346185,23346617-23346644
          Length = 463

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 441 MDGRPNV-RKLAEPDTRAKTHTAIINGPTIVAL 536
           +D  PN+ R L EP   A TH  IIN P +  L
Sbjct: 247 LDDAPNMERLLLEPIAGASTHVKIINAPRLKVL 279


>08_01_0658 - 5682425-5682832,5682878-5683000
          Length = 176

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 368 RHWVRS*PSGGRRSMQAEEVAAKENGWKAKRTEAC*ARHTSEDPHR 505
           R WV+     GRR  +  E +  + GW+   TEA    H +  P R
Sbjct: 6   RRWVKGEVRSGRRPSERREKSGGQQGWRL-ATEARGRPHAAVGPSR 50


>04_04_0318 +
           24347364-24348826,24348920-24349048,24349158-24349293,
           24349447-24349535,24349631-24349742,24349836-24349942,
           24350033-24350129
          Length = 710

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 515 IDYSGVGLRSCVGLSKLPYVWPSIHSLWLQLLQLACYVYHHWVM 384
           ++Y    L+  +   K PY    +  L LQLL+   Y++ +WV+
Sbjct: 443 MEYMEHDLKGVMEAMKQPYSQSEVKCLMLQLLEGVKYLHDNWVL 486


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 515 IDYSGVGLRSCVGLSKLPYVWPSIHSLWLQLLQLACYVYHHWVM 384
           ++Y    L+  +   K PY    +  L LQLL+   Y++ +WV+
Sbjct: 427 MEYMEHDLKGVMETMKQPYSQSEVKCLMLQLLEGVKYLHDNWVL 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,125,662
Number of Sequences: 37544
Number of extensions: 445618
Number of successful extensions: 1095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)