Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0976
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029153-1|ABJ17088.1|  708|Drosophila melanogaster SD01194p pro...    32   0.62 
BT028873-1|ABI34254.1|  708|Drosophila melanogaster SD20656p pro...    32   0.62 
U92536-1|AAD41441.1| 1487|Drosophila melanogaster RECQ helicase ...    29   5.8  
AY060857-1|AAL28405.1|  276|Drosophila melanogaster GM03260p pro...    29   5.8  
AE014298-648|AAF45962.3| 1019|Drosophila melanogaster CG12179-PB...    29   5.8  
AE014297-1368|AAF54691.1| 1487|Drosophila melanogaster CG6920-PA...    29   5.8  
AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-P...    29   7.7  

>BT029153-1|ABJ17088.1|  708|Drosophila melanogaster SD01194p
           protein.
          Length = 708

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 174 ITSIVSVSKAISTSHSRSNGRTHLRIHVTHNDN 76
           I +++SVS+A   SHSRS   +HL  H + ++N
Sbjct: 232 IPAVLSVSEAQPRSHSRSQSHSHLHSHSSSHNN 264


>BT028873-1|ABI34254.1|  708|Drosophila melanogaster SD20656p
           protein.
          Length = 708

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 174 ITSIVSVSKAISTSHSRSNGRTHLRIHVTHNDN 76
           I +++SVS+A   SHSRS   +HL  H + ++N
Sbjct: 232 IPAVLSVSEAQPRSHSRSQSHSHLHSHSSSHNN 264


>U92536-1|AAD41441.1| 1487|Drosophila melanogaster RECQ helicase
            homolog protein.
          Length = 1487

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 332  KLYQEGANLPRCRHWVRS*PSGGRR-SMQAEEVAAKENGWKAKRT 463
            K Y+     P  R    +   GGR  + +AE  A+  +GWK+K+T
Sbjct: 1428 KRYKTSTTSPAARKTTSARGRGGRAGAKRAESSASSASGWKSKKT 1472


>AY060857-1|AAL28405.1|  276|Drosophila melanogaster GM03260p
           protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 332 KLYQEGANLPRCRHWVRS*PSGGRR-SMQAEEVAAKENGWKAKRT 463
           K Y+     P  R    +   GGR  + +AE  A+  +GWK+K+T
Sbjct: 217 KRYKTSTTSPAARKTTSARGRGGRAGAKRAESSASSASGWKSKKT 261


>AE014298-648|AAF45962.3| 1019|Drosophila melanogaster CG12179-PB,
           isoform B protein.
          Length = 1019

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
 Frame = +2

Query: 263 TNAHSRPRSQKPN*LCYDQQKV*KLYQEGANLPRCRHWVRS*PSGGRRSMQAEEVAAKEN 442
           TN HS    Q+   L  DQ+K  + +++   L R +  ++    G R++ + E+   +E 
Sbjct: 217 TNHHSGREQQEIQPLMRDQRKAEQRHEKDHQLEREQQGIQQLSKGQRKAKKREKEREQER 276

Query: 443 GWKAKRTEAC*A--RHTSEDPHRYNQWANDRRTETTASDLDT 562
            + A + E   +  RH +++  +      +  T  TAS   T
Sbjct: 277 QYTAAQFEKIRSNRRHVNKENQKPENPVVNPSTGVTASTSTT 318


>AE014297-1368|AAF54691.1| 1487|Drosophila melanogaster CG6920-PA
            protein.
          Length = 1487

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 332  KLYQEGANLPRCRHWVRS*PSGGRR-SMQAEEVAAKENGWKAKRT 463
            K Y+     P  R    +   GGR  + +AE  A+  +GWK+K+T
Sbjct: 1428 KRYKTSTTSPAARKTTSARGRGGRAGAKRAESSASSASGWKSKKT 1472


>AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-PA
            protein.
          Length = 3687

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 58   TKNHELVIVMGDMNAKVGSTITPGVTGAYGLGNRNDRGDTLIEFCQD 198
            +++H++V  M D+N + G         AY L   +  G+ L + C D
Sbjct: 1540 SQHHQIVFEMADLNLESGYDCNWDYLEAYDLTEDDTEGERLFKVCGD 1586


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,155,481
Number of Sequences: 53049
Number of extensions: 739574
Number of successful extensions: 1764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)