Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0976
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    46   2e-05
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    46   3e-05
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    36   0.035
Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical pr...    31   0.75 
AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease I...    31   0.75 
U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical p...    28   7.0  
U23524-4|AAC46824.1|  173|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U00033-11|AAC48296.1|  200|Caenorhabditis elegans Hypothetical p...    28   7.0  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +1

Query: 13  QIEDLYRAIDTLLKSTKNHELVIVMGDMNAKVGSTIT-PGVTGAYGLGNRNDRGDTLIEF 189
           +I D Y +++ + +  ++ +  +V+GD NA++G         G + +  RND G+ L  F
Sbjct: 61  EICDFYDSVEDVFRECRS-KYKLVIGDFNARMGCRQNNERYIGPHAMEPRNDTGELLTTF 119

Query: 190 CQDNNLIIANTFFKLPPRRLYT 255
           C+ N L   N+ FK P  + +T
Sbjct: 120 CETNRLWHTNSMFKKPMHKRWT 141


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +1

Query: 13  QIEDLYRAIDTLLKSTKNHELVIVMGDMNAKVGSTIT-PGVTGAYGLGNRNDRGDTLIEF 189
           +I D Y +++ + +  ++ +  +V+GD NA++G         G + +  RND G+ L  F
Sbjct: 232 EICDFYDSVEDVFRECRS-KYKLVIGDFNARMGCRQNNERYIGPHAMEPRNDTGELLATF 290

Query: 190 CQDNNLIIANTFFKLPPRRLYT 255
           C+ N L   N+ FK P  + +T
Sbjct: 291 CETNRLWHTNSMFKKPMHKRWT 312


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +1

Query: 13  QIEDLYRAIDTLLKSTKNHELVIVMGDMNAKVGSTI--TPGVTGAYGLGNRNDRGDTLIE 186
           +I D Y  ++    + ++ +  +++GD NA+VG+    T    G + +  RND G+ L  
Sbjct: 76  EISDFYEKLEDTYHACRS-KYKLIIGDFNARVGNRKDETERYIGTHAMEPRNDTGEILAT 134

Query: 187 FCQDNNLIIANTFFKLPPRRLYT 255
           FC+ N L   N+ F  P  R +T
Sbjct: 135 FCESNRLWHINSQFYKPINRRWT 157


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 136 GAYGLGNRNDRGDTLIEFCQDNNLIIANTFFKLPPRRLYT 255
           G + +  RND G+ L  FC+ N L   N+ FK P  + +T
Sbjct: 12  GPHAMEPRNDTGELLATFCETNRLWHTNSMFKKPMHKRWT 51


>Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical
           protein R09B3.1a protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 255 WTSPMHTVDRVVRNQIDYVMINRRYRNCIKKAQTYPGADIGSDHNPVVVDV 407
           W+   ++  + V  ++DY +++ R  N +K++       +GSDH PVV+ +
Sbjct: 237 WSYLANSRQKDVGWRLDYYVVSNRIMNKVKRSDIMSSV-MGSDHAPVVMQI 286


>AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease III
           homolog protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 255 WTSPMHTVDRVVRNQIDYVMINRRYRNCIKKAQTYPGADIGSDHNPVVVDV 407
           W+   ++  + V  ++DY +++ R  N +K++       +GSDH PVV+ +
Sbjct: 237 WSYLANSRQKDVGWRLDYYVVSNRIMNKVKRSDIMSSV-MGSDHAPVVMQI 286


>U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical
           protein F20B6.5 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 338 YQEGANLPRCRHWVRS*PSGGRRSMQAEEVAAKENGWKAKRTE 466
           + +G +  R R   R+ P  G+R+MQ E V+A ++G   +RTE
Sbjct: 41  FDDGTDSSRSRS-TRN-PPEGQRNMQFEGVSASQSGTNRRRTE 81


>Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical
           protein F21H7.9 protein.
          Length = 1108

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 596 IYLLHFALD*STCRGQRQWFQC--DDRWPIDYSGVGLRS 486
           +Y +H +     C GQ     C  DDRW I  SG GL+S
Sbjct: 650 LYFIHSSF--LKCHGQLTSRCCLIDDRWQIKISGFGLKS 686


>U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical
           protein F55G1.12 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 231 ATTTSAIHWTSPMHTVDRVVRNQIDYVMINRRYRNCI 341
           A T+ ++   +  H   R+  N++DY  +  RY  CI
Sbjct: 48  AVTSESVRINTAPHFESRIAINRVDYYRLGGRYGVCI 84


>U23524-4|AAC46824.1|  173|Caenorhabditis elegans Hypothetical
           protein C29F5.5 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 557 RGQRQWFQCDDRWPIDYSGVGLRSCVGLSKLPYVWPSIHSLWLQLLQ 417
           RG R W +  +R  +D S  G + C G  +  + W ++  +W+ +++
Sbjct: 101 RGSRIWEKSGERCFVDCSIEGTQKCYGWFR--WKWNNMDEVWIDVVE 145


>U00033-11|AAC48296.1|  200|Caenorhabditis elegans Hypothetical
           protein F37C12.10 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 323 SVDHNIVNLVSDYAVYC-VHW*CP 255
           S D  I+NL+  Y  YC + W CP
Sbjct: 96  SYDQQIINLIGRYVRYCRILWICP 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,869
Number of Sequences: 27780
Number of extensions: 368535
Number of successful extensions: 924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)