Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0976
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54060.1 68414.m06160 expressed protein similar to 6b-interac...    30   1.2  
At4g23400.1 68417.m03373 major intrinsic family protein / MIP fa...    29   3.8  
At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family pr...    29   3.8  
At1g53770.1 68414.m06119 expressed protein                             29   3.8  
At4g00430.1 68417.m00059 plasma membrane intrinsic protein, puta...    28   5.0  
At2g41870.1 68415.m05177 remorin family protein contains Pfam do...    28   5.0  
At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (P...    28   5.0  
At1g42560.1 68414.m04907 seven transmembrane MLO family protein ...    27   8.7  
At1g27480.1 68414.m03350 lecithin:cholesterol acyltransferase fa...    27   8.7  

>At1g54060.1 68414.m06160 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 383

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +1

Query: 94  MNAKVGSTITPGVTGAYGLGNRNDRG 171
           MNA      TP VTG  G GNRN RG
Sbjct: 53  MNALALVVHTPSVTGGGGSGNRNGRG 78


>At4g23400.1 68417.m03373 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 287

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -2

Query: 550 RGSGFSATIVGPLIIAVWVFARVSGSASFRTFGLPSIL---FGCNFFSLH-ATSTTTGL* 383
           +GSG  A IVG  ++   VF+      S R   +P +     G   F +H AT   TG  
Sbjct: 175 KGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTG 234

Query: 382 SDPMSAPG 359
            +P  + G
Sbjct: 235 INPARSLG 242


>At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family
           protein contains Pfam profile PF00483: Nucleotidyl
           transferase; low similarity to mannose-1-phosphate
           guanylyltransferase [Hypocrea jecorina] GI:3323397
          Length = 406

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 233 SLKKVFAIMRLLSWQNSISVSPLSFLFPRP*APVTPGVMVEPTFAFMSPITITNS*FLVD 54
           S +KV A++ +          PLSF  P+P  P+    M+    +    I+     FL+ 
Sbjct: 2   SEEKVVAVIMVGGPTKGTRFRPLSFNTPKPLIPLAGQPMIHHPISACKKISNLAQIFLIG 61

Query: 53  F-NKVSIALYKSSI 15
           F  +   ALY SSI
Sbjct: 62  FYEEREFALYVSSI 75


>At1g53770.1 68414.m06119 expressed protein
          Length = 563

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = +3

Query: 252 HWTSPMHTVDRVVRNQIDYVMINRRYRNCIKKAQTYPGADIGSDHNPVVVDVACKLKKLQ 431
           H  S + T+D V       + +NR+ +N +         DIG   +      +C  +K+ 
Sbjct: 136 HTVSNLSTIDDVKSAVFRQISLNRQIQNALLSPHKTGNVDIGGSSDGYFAGGSC--RKVD 193

Query: 432 PKRMDGRPNVRKLAEPD 482
            K ++GR  ++    PD
Sbjct: 194 QK-LNGRKTIQWKPRPD 209


>At4g00430.1 68417.m00059 plasma membrane intrinsic protein,
           putative identical to transmembrane protein GI:535780
           from [Arabidopsis thaliana]; very strong similarity to
           SP|Q08733 Plasma membrane intrinsic protein 1C
           (Transmembrane protein B) (TMP-B) {Arabidopsis
           thaliana}; contains Pfam profile PF00230: Major
           intrinsic protein;
          Length = 287

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -2

Query: 550 RGSGFSATIVGPLIIAVWVFARVSGSASFRTFGLPSIL---FGCNFFSLH-ATSTTTGL* 383
           +GSG  A I+G  ++   VF+      S R   +P +     G   F +H AT   TG  
Sbjct: 175 KGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTG 234

Query: 382 SDPMSAPG 359
            +P  + G
Sbjct: 235 INPARSLG 242


>At2g41870.1 68415.m05177 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 274

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +3

Query: 357 YPGA--DIGSDHNPVVVDVACKLKKLQPKRMDGRPNV---RKLAEPDTRAKTHTAIING 518
           YPG+  D GSD+ P    V   +++++ + ++ +       KLA+ + R K   A+ING
Sbjct: 133 YPGSGLDPGSDNGPGQSRVGSTVQRVKREEVEAKITAWQTAKLAKINNRFKREDAVING 191


>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C
           (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane
           protein B (TMPB) identical to plasma membrane intrinsic
           protein 1c SP:Q08733 from [Arabidopsis thaliana]
          Length = 286

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -2

Query: 550 RGSGFSATIVGPLIIAVWVFARVSGSASFRTFGLPSIL---FGCNFFSLH-ATSTTTGL* 383
           +GSG  A I+G  ++   VF+      S R   +P +     G   F +H AT   TG  
Sbjct: 174 KGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTG 233

Query: 382 SDPMSAPG 359
            +P  + G
Sbjct: 234 INPARSLG 241


>At1g42560.1 68414.m04907 seven transmembrane MLO family protein /
           MLO-like protein 9 (MLO9) nearly identical to membrane
           protein Mlo9 [Arabidopsis thaliana] GI:14091588; similar
           to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
           [Hordeum vulgare][Barley]
          Length = 467

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 437 LWLQLLQLACYVYHHWVMI*PNVCTGVGLRLL-DTISIP 324
           +W +    +C+ +HH+ +I   VC GVG++ L   I++P
Sbjct: 385 IWYEFGLRSCF-HHHFGLIIIRVCLGVGVQFLCSYITLP 422


>At1g27480.1 68414.m03350 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           LCAT-like lysophospholipase (LLPL) [Homo sapiens]
           GI:4589720; contains Pfam profile PF02450:
           Lecithin:cholesterol acyltransferase
           (phosphatidylcholine-sterol acyltransferase)
          Length = 432

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -1

Query: 374 NVCTGVGLRLLDTISIPSVDHNI--VNLVSDY---AVYCVHW*CPVYSRRGGSLKKVFAI 210
           ++C  VG  +   I +P    N   V L  +Y   +V+C  W  P++ + GG  +  F  
Sbjct: 22  SMCQAVGSNVYPLILVPGNGGNQLEVRLDREYKPSSVWCSSWLYPIHKKSGGWFRLWFDA 81

Query: 209 MRLLS 195
             LLS
Sbjct: 82  AVLLS 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,002,713
Number of Sequences: 28952
Number of extensions: 347957
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)