Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0975
(508 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15; ... 119 4e-26
UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative; ... 95 6e-19
UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;... 91 1e-17
UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1; ... 87 3e-16
UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma j... 79 8e-14
UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1; A... 77 2e-13
UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14; ... 70 3e-11
UniRef50_Q5CJB8 Cluster: Acidic ribosomal protein P1; n=3; Eimer... 66 4e-10
UniRef50_Q0UPB2 Cluster: Putative uncharacterized protein; n=1; ... 64 2e-09
UniRef50_Q4N3J3 Cluster: 60S acidic ribosomal protein P1, putati... 62 7e-09
UniRef50_UPI0000F2B32D Cluster: PREDICTED: hypothetical protein;... 62 9e-09
UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative; ... 61 2e-08
UniRef50_A0DBJ7 Cluster: Chromosome undetermined scaffold_44, wh... 57 2e-07
UniRef50_Q7R992 Cluster: Acidic ribosomal protein P1-hydromedusa... 56 6e-07
UniRef50_Q7R476 Cluster: GLP_480_102976_103332; n=1; Giardia lam... 54 1e-06
UniRef50_A2G448 Cluster: 60s Acidic ribosomal protein; n=2; Tric... 54 1e-06
UniRef50_Q9HFQ7 Cluster: 60S acidic ribosomal protein P1-A; n=11... 54 2e-06
UniRef50_UPI0000499C26 Cluster: 60S acidic ribosomal protein P1;... 52 1e-05
UniRef50_Q7XBP6 Cluster: Ubiquitin/ribosomal protein P1 fusion; ... 48 1e-04
UniRef50_Q9N6F4 Cluster: 60S acidic ribosomal protein P2, putati... 46 7e-04
UniRef50_P10622 Cluster: 60S acidic ribosomal protein P1-beta; n... 46 7e-04
UniRef50_O46313 Cluster: 60S acidic ribosomal protein P1; n=4; L... 45 9e-04
UniRef50_P26643 Cluster: 60S acidic ribosomal protein P1; n=4; E... 44 0.002
UniRef50_A2DFD3 Cluster: 60S acidic ribosomal protein P1, putati... 41 0.019
UniRef50_Q4QFE2 Cluster: 60S acidic ribosomal protein, putative;... 40 0.024
UniRef50_Q22XR4 Cluster: 60s Acidic ribosomal protein; n=1; Tetr... 39 0.057
UniRef50_O28780 Cluster: 50S ribosomal protein L12P; n=26; Archa... 36 0.70
UniRef50_P15772 Cluster: 50S ribosomal protein L12P; n=10; Archa... 35 0.92
UniRef50_Q7MT74 Cluster: ThiH protein; n=1; Porphyromonas gingiv... 34 2.1
UniRef50_Q98SB2 Cluster: Acidic ribosomal protein P1; n=1; Guill... 33 2.8
UniRef50_UPI0000608022 Cluster: PREDICTED: similar to 60S acidic... 33 3.7
UniRef50_Q39NV6 Cluster: Transcriptional regulator, AraC family;... 33 3.7
UniRef50_O57705 Cluster: 50S ribosomal protein L12P; n=5; Archae... 33 3.7
UniRef50_UPI000155E878 Cluster: PREDICTED: similar to ribosomal ... 33 4.9
UniRef50_Q8UDY7 Cluster: Cyclopropane-fatty-acyl-phospholipid sy... 33 4.9
UniRef50_Q5ZTD7 Cluster: Expressed protein; n=4; Legionella pneu... 32 8.6
UniRef50_Q6MAN0 Cluster: Serine/threonine-protein kinase pknD; n... 32 8.6
>UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15;
Eukaryota|Rep: 60S acidic ribosomal protein P1 -
Drosophila melanogaster (Fruit fly)
Length = 112
Score = 119 bits (286), Expect = 4e-26
Identities = 56/64 (87%), Positives = 62/64 (96%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 242 TNIG 253
TNIG
Sbjct: 61 TNIG 64
>UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative;
n=2; Aedes aegypti|Rep: Acidic ribosomal protein P1,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 106
Score = 95.5 bits (227), Expect = 6e-19
Identities = 49/68 (72%), Positives = 56/68 (82%)
Frame = +2
Query: 50 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 229
S++K+ + A +C YSALIL DDDVAVT EKISTI A VD+EPYWPGLF KALEGINV
Sbjct: 9 SQVKITAIA--SCAYSALILFDDDVAVTDEKISTI--QANVDIEPYWPGLFTKALEGINV 64
Query: 230 RDLITNIG 253
+DLITNIG
Sbjct: 65 KDLITNIG 72
>UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;
Eukaryota|Rep: 60S acidic ribosomal protein P1 - Homo
sapiens (Human)
Length = 114
Score = 91.5 bits (217), Expect = 1e-17
Identities = 40/64 (62%), Positives = 52/64 (81%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 242 TNIG 253
N+G
Sbjct: 61 CNVG 64
>UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 88
Score = 86.6 bits (205), Expect = 3e-16
Identities = 47/55 (85%), Positives = 49/55 (89%)
Frame = +2
Query: 89 VYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIG 253
VYSALILVDD VAVT EKISTILKAA +VEPYW LFAKALEGINV+DLITNIG
Sbjct: 36 VYSALILVDD-VAVTDEKISTILKAA--NVEPYWRALFAKALEGINVKDLITNIG 87
>UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09468 protein - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 78.6 bits (185), Expect = 8e-14
Identities = 38/64 (59%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Frame = +2
Query: 65 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD-VEPYWPGLFAKALEGINVRDLI 241
+SK+ELACVY+AL+L DDD+ VT +KI+TILKAA + VE Y P LFA +L G NV+DL+
Sbjct: 1 MSKSELACVYAALMLADDDIDVTADKINTILKAANIKFVESYLPNLFATSLNGKNVKDLL 60
Query: 242 TNIG 253
++G
Sbjct: 61 MSMG 64
>UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1;
Arabidopsis thaliana|Rep: 60s acidic ribosomal protein
P1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 111
Score = 77.0 bits (181), Expect = 2e-13
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +2
Query: 65 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 244
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 245 NIG 253
N+G
Sbjct: 61 NVG 63
>UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14;
Dikarya|Rep: 60S acidic ribosomal protein P1 -
Cladosporium herbarum (Davidiella tassiana)
Length = 110
Score = 70.1 bits (164), Expect = 3e-11
Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +2
Query: 65 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAV-DVEPYWPGLFAKALEGINVRDLI 241
+S AELA Y+ALIL D+ + +T +K+ ++ AA V ++EP W LFAKALEG +V+DL+
Sbjct: 1 MSAAELASSYAALILADEGLEITADKLQALISAAKVPEIEPIWTSLFAKALEGKDVKDLL 60
Query: 242 TNIG 253
N+G
Sbjct: 61 LNVG 64
>UniRef50_Q5CJB8 Cluster: Acidic ribosomal protein P1; n=3;
Eimeriorina|Rep: Acidic ribosomal protein P1 -
Cryptosporidium hominis
Length = 124
Score = 66.1 bits (154), Expect = 4e-10
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +2
Query: 41 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEG 220
++ ++L EL C Y+AL+L D V VT E I I+ AA VEPY+PGLFA+AL
Sbjct: 4 VSMNELPQSQVQELICSYAALVLSDGGVPVTSENIKKIISAAGGSVEPYFPGLFAQALST 63
Query: 221 INVRDLITNIG 253
NV D++ G
Sbjct: 64 TNVSDIVAGCG 74
>UniRef50_Q0UPB2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 114
Score = 64.1 bits (149), Expect = 2e-09
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAV-DVEPYWPGLFAKALEGINVRDL 238
M + E A Y+ALIL DD +T EK+ +L AA + DVEP W LFAKALEG +V+D+
Sbjct: 1 MPTDPERAVSYAALILADDATPITPEKLQVLLIAAGIEDVEPIWTTLFAKALEGKDVKDI 60
Query: 239 ITNI 250
+T +
Sbjct: 61 LTEV 64
>UniRef50_Q4N3J3 Cluster: 60S acidic ribosomal protein P1, putative;
n=2; Theileria|Rep: 60S acidic ribosomal protein P1,
putative - Theileria parva
Length = 117
Score = 62.1 bits (144), Expect = 7e-09
Identities = 29/68 (42%), Positives = 47/68 (69%)
Frame = +2
Query: 50 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 229
S+L + EL CVYS+L+L DD + VT + I ++KAA D++P+ P LFA+AL+G ++
Sbjct: 7 SELTKEQREELMCVYSSLVLYDDGLDVTQDNILKLVKAAKGDMQPFTPMLFARALKGKDL 66
Query: 230 RDLITNIG 253
L++ +G
Sbjct: 67 GSLLSAVG 74
>UniRef50_UPI0000F2B32D Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 103
Score = 61.7 bits (143), Expect = 9e-09
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2
Query: 77 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGI 223
+ C+YSA IL +D V V +KI+T +KAA ++VEP+WPGLFAK+L +
Sbjct: 19 KFTCIYSAHILHNDKVMVMEDKINTPIKAAGINVEPFWPGLFAKSLNNV 67
>UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative;
n=1; Aedes aegypti|Rep: Acidic ribosomal protein P1,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 88
Score = 60.9 bits (141), Expect = 2e-08
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +2
Query: 164 AAVDVEPYWPGLFAKALEGINVRDLITNIG 253
A VD+EPYWP LFAKALEGINV+DLITNIG
Sbjct: 6 ANVDIEPYWPALFAKALEGINVKDLITNIG 35
>UniRef50_A0DBJ7 Cluster: Chromosome undetermined scaffold_44, whole
genome shotgun sequence; n=8; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_44,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 57.2 bits (132), Expect = 2e-07
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 74 AELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
+E AC Y+ALIL +D+ + K++ I+KAA + VEP W +F KAL+G V DL+
Sbjct: 17 SEAACTYAALILYEDNQEINAAKLAQIIKAANLRVEPIWTKVFEKALKGKKVGDLL 72
>UniRef50_Q7R992 Cluster: Acidic ribosomal protein P1-hydromedusa;
n=5; Plasmodium|Rep: Acidic ribosomal protein
P1-hydromedusa - Plasmodium yoelii yoelii
Length = 119
Score = 55.6 bits (128), Expect = 6e-07
Identities = 26/69 (37%), Positives = 44/69 (63%)
Frame = +2
Query: 50 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 229
++L K EL C Y+ALIL ++ +++T E I ++K + V PY P LF KAL+G ++
Sbjct: 7 AELPECEKQELLCTYAALILHEEKMSITNENIVKLIKKSNNTVLPYLPMLFEKALKGKDI 66
Query: 230 RDLITNIGL 256
L++N+ +
Sbjct: 67 EGLLSNLSV 75
>UniRef50_Q7R476 Cluster: GLP_480_102976_103332; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_480_102976_103332 - Giardia
lamblia ATCC 50803
Length = 118
Score = 54.4 bits (125), Expect = 1e-06
Identities = 26/59 (44%), Positives = 37/59 (62%)
Frame = +2
Query: 77 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIG 253
E ACV +A+IL D++ T + +I AA V V+ W LFA LEG NV++L+T +G
Sbjct: 5 ETACVLAAIILADENQEPTAANLKSICDAAGVKVDSIWFTLFANYLEGKNVKELLTTLG 63
>UniRef50_A2G448 Cluster: 60s Acidic ribosomal protein; n=2;
Trichomonas vaginalis G3|Rep: 60s Acidic ribosomal
protein - Trichomonas vaginalis G3
Length = 104
Score = 54.4 bits (125), Expect = 1e-06
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +2
Query: 74 AELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIG 253
AELACVY+ALIL D + + + ++ ++ A+ + ++ +W L+A + NV DLI N+
Sbjct: 3 AELACVYAALILNDGEKEINADSLAKVVAASGLKLDQFWVNLYADYFKKANVADLIKNVS 62
Query: 254 L 256
L
Sbjct: 63 L 63
>UniRef50_Q9HFQ7 Cluster: 60S acidic ribosomal protein P1-A; n=11;
Eukaryota|Rep: 60S acidic ribosomal protein P1-A -
Candida albicans (Yeast)
Length = 106
Score = 54.0 bits (124), Expect = 2e-06
Identities = 26/57 (45%), Positives = 37/57 (64%)
Frame = +2
Query: 77 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 247
E A Y+ALIL D +V +T EK+ ++ A V+VE W LFAKALEG ++++ N
Sbjct: 4 ESALSYAALILADAEVEITSEKLLALVTKANVEVEGIWADLFAKALEGKDLKEFFFN 60
>UniRef50_UPI0000499C26 Cluster: 60S acidic ribosomal protein P1;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: 60S acidic
ribosomal protein P1 - Entamoeba histolytica HM-1:IMSS
Length = 106
Score = 51.6 bits (118), Expect = 1e-05
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +2
Query: 77 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGL 256
ELA +AL++ + +T E I+T+L A + VE +WP + AKAL N+ DLI + G
Sbjct: 9 ELAVALAALLIHEAGKEITAEHINTVLHHANIKVEGFWPIIMAKALTNANIEDLIMDAGS 68
Query: 257 EWVLLRPLVE 286
V P +
Sbjct: 69 APVAAAPAAQ 78
>UniRef50_Q7XBP6 Cluster: Ubiquitin/ribosomal protein P1 fusion;
n=3; Chlorarachniophyceae|Rep: Ubiquitin/ribosomal
protein P1 fusion - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 221
Score = 48.0 bits (109), Expect = 1e-04
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = +2
Query: 71 KAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEG 220
K ELA +Y +IL + +T E I+ +L A+ ++V PYWP +FA+ ++G
Sbjct: 119 KQELAIMYCGMILNEVKADITEENINKLLSASKIEVAPYWPKMFAEIVKG 168
>UniRef50_Q9N6F4 Cluster: 60S acidic ribosomal protein P2, putative;
n=7; Trypanosomatidae|Rep: 60S acidic ribosomal protein
P2, putative - Leishmania major
Length = 111
Score = 45.6 bits (103), Expect = 7e-04
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +2
Query: 65 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
+S LAC Y+AL+L D + + E I+ +KAA V++ P P +FA+ LE +V L+
Sbjct: 1 MSAETLACTYAALMLSDAGLPTSAENIAAAVKAAGVEMRPTLPIIFARFLEKKSVETLM 59
>UniRef50_P10622 Cluster: 60S acidic ribosomal protein P1-beta;
n=21; Ascomycota|Rep: 60S acidic ribosomal protein
P1-beta - Saccharomyces cerevisiae (Baker's yeast)
Length = 106
Score = 45.6 bits (103), Expect = 7e-04
Identities = 18/51 (35%), Positives = 35/51 (68%)
Frame = +2
Query: 92 YSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 244
++A IL D + +T + + TI KAA +V+ W ++AKALEG +++++++
Sbjct: 8 FAAFILADAGLEITSDNLLTITKAAGANVDNVWADVYAKALEGKDLKEILS 58
>UniRef50_O46313 Cluster: 60S acidic ribosomal protein P1; n=4;
Leishmania|Rep: 60S acidic ribosomal protein P1 -
Leishmania peruviana
Length = 107
Score = 45.2 bits (102), Expect = 9e-04
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 80 LACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
LAC Y+AL+L D + + E I+ +KAA V V P P +FA+ LE +V L+
Sbjct: 6 LACTYAALMLSDAGLPTSAENIAAAVKAAGVSVRPTMPIIFARFLEKKSVEALM 59
>UniRef50_P26643 Cluster: 60S acidic ribosomal protein P1; n=4;
Eukaryota|Rep: 60S acidic ribosomal protein P1 -
Trypanosoma cruzi
Length = 109
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
M SK +LAC Y+ALIL D + + + KAA VDV FA L+ +++ D++
Sbjct: 1 MSSKQQLACTYAALILADSG-KTDMDSLLKVTKAAGVDVSKGMASAFASILKNVDINDVL 59
Query: 242 TNI 250
+ +
Sbjct: 60 SKV 62
>UniRef50_A2DFD3 Cluster: 60S acidic ribosomal protein P1, putative;
n=1; Trichomonas vaginalis G3|Rep: 60S acidic ribosomal
protein P1, putative - Trichomonas vaginalis G3
Length = 44
Score = 40.7 bits (91), Expect = 0.019
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 77 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYW 190
ELACVY+ALIL D D +T + + I+ A+ + + +W
Sbjct: 4 ELACVYAALILHDGDKEITADALQKIIDASGLQTDKFW 41
>UniRef50_Q4QFE2 Cluster: 60S acidic ribosomal protein, putative;
n=8; Eukaryota|Rep: 60S acidic ribosomal protein,
putative - Leishmania major
Length = 108
Score = 40.3 bits (90), Expect = 0.024
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +2
Query: 65 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 244
++ A+LAC Y+ALIL + I + KAA V+V FA AL +NV +++
Sbjct: 1 MTTAQLACTYAALILSASG-KTDADSICAVTKAAGVEVSHGMAAAFANALAAVNVNEVLG 59
Query: 245 NI 250
+I
Sbjct: 60 SI 61
>UniRef50_Q22XR4 Cluster: 60s Acidic ribosomal protein; n=1;
Tetrahymena thermophila SB210|Rep: 60s Acidic ribosomal
protein - Tetrahymena thermophila SB210
Length = 271
Score = 39.1 bits (87), Expect = 0.057
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 ACVYSALILVDDDVAVTGEKISTIL-KAAAVDVEPYWPGLFAKALEGINVRDLITNIG 253
AC Y+ L+L DD A+T + I+ +L KA +VE Y P L+ + + I N G
Sbjct: 8 ACTYAVLLLSDDGQAITVDNINKVLTKAKVQNVEKYLPKLYVSNITPAVIASTIANGG 65
>UniRef50_O28780 Cluster: 50S ribosomal protein L12P; n=26;
Archaea|Rep: 50S ribosomal protein L12P - Archaeoglobus
fulgidus
Length = 106
Score = 35.5 bits (78), Expect = 0.70
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 89 VYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
VY+AL+L +T + + +L+AA V+V+ ALEG+N+ + I
Sbjct: 4 VYAALLLHSAGKEITEDNVKAVLEAAGVEVDEARVKALVAALEGVNIDEAI 54
>UniRef50_P15772 Cluster: 50S ribosomal protein L12P; n=10;
Archaea|Rep: 50S ribosomal protein L12P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 115
Score = 35.1 bits (77), Expect = 0.92
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 89 VYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
VY+ALIL + D + + ++ +L AA VDVE ALE +++ + +
Sbjct: 4 VYAALILNEADEEINEDNLTDVLDAAGVDVEESRVKALVAALEDVDIEEAV 54
>UniRef50_Q7MT74 Cluster: ThiH protein; n=1; Porphyromonas
gingivalis|Rep: ThiH protein - Porphyromonas gingivalis
(Bacteroides gingivalis)
Length = 370
Score = 33.9 bits (74), Expect = 2.1
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = -3
Query: 206 WRTDLANMALHLQPPLSRWW--KFSHQLRQHHHQPG*EQSKHM-----LIQLLTPFLVLN 48
WR D ALHL+ +W KFS L + G + K ++QL+T F +L+
Sbjct: 232 WRVDSVFTALHLRYLEQTYWKSKFSISLPRLRPATGGWEPKDPIDDVGMVQLITAFRLLD 291
Query: 47 VQVAVGLSSRENK 9
V + LS+RE++
Sbjct: 292 KDVEISLSTRESR 304
>UniRef50_Q98SB2 Cluster: Acidic ribosomal protein P1; n=1;
Guillardia theta|Rep: Acidic ribosomal protein P1 -
Guillardia theta (Cryptomonas phi)
Length = 104
Score = 33.5 bits (73), Expect = 2.8
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 80 LACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRD 235
++C+ S LIL ++ + +T + IS +LK + +VE Y+ F + ++ ++
Sbjct: 10 ISCILSILILKENKIKITKDLISLVLKTSNNNVEDYFLSYFERISASLDEKE 61
>UniRef50_UPI0000608022 Cluster: PREDICTED: similar to 60S acidic
ribosomal protein P1 isoform 4; n=3;
Euarchontoglires|Rep: PREDICTED: similar to 60S acidic
ribosomal protein P1 isoform 4 - Mus musculus
Length = 88
Score = 33.1 bits (72), Expect = 3.7
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDD 121
M S +ELAC+YSALIL +DD
Sbjct: 1 MASASELACIYSALILHEDD 20
>UniRef50_Q39NV6 Cluster: Transcriptional regulator, AraC family;
n=16; Burkholderiaceae|Rep: Transcriptional regulator,
AraC family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 352
Score = 33.1 bits (72), Expect = 3.7
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 104 ILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNI 250
+L + VT E+ ST+ + A+D++ PG+F++ L G ++ L ++
Sbjct: 58 LLGEPHARVTEEQFSTLYRTLAIDLDDEMPGIFSRPLRGGTLKYLCLSL 106
>UniRef50_O57705 Cluster: 50S ribosomal protein L12P; n=5;
Archaea|Rep: 50S ribosomal protein L12P - Pyrococcus
horikoshii
Length = 108
Score = 33.1 bits (72), Expect = 3.7
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 89 VYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
VY+AL+L + E + +L+AA V+ E ALEG+N+ ++I
Sbjct: 4 VYAALLLHSVGKEINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVI 54
>UniRef50_UPI000155E878 Cluster: PREDICTED: similar to ribosomal
protein P1; n=3; Eutheria|Rep: PREDICTED: similar to
ribosomal protein P1 - Equus caballus
Length = 125
Score = 32.7 bits (71), Expect = 4.9
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 80 LACVYSALILVDDDVAVT 133
LAC+YSALIL DD+V VT
Sbjct: 43 LACIYSALILHDDEVTVT 60
>UniRef50_Q8UDY7 Cluster: Cyclopropane-fatty-acyl-phospholipid
synthase; n=1; Agrobacterium tumefaciens str. C58|Rep:
Cyclopropane-fatty-acyl-phospholipid synthase -
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Length = 410
Score = 32.7 bits (71), Expect = 4.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 241 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIINQDESRVNT 86
D + ++ F+ GE WP + + R + GG + II+ DESR +T
Sbjct: 261 DNIVSVEMFEAVGESYWPSYFEMLKRCLKPGGRAVLQ----IISIDESRFDT 308
>UniRef50_Q5ZTD7 Cluster: Expressed protein; n=4; Legionella
pneumophila|Rep: Expressed protein - Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1
/ATCC 33152 / DSM 7513)
Length = 509
Score = 31.9 bits (69), Expect = 8.6
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +2
Query: 32 LRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYW 190
L+ + + + S +L Y +L + ++TG+++ + ++A +++EPYW
Sbjct: 374 LKDIVKCTGYLNSSPKLEFCYKTQLLKLETCSITGKELQSAVQATLINLEPYW 426
>UniRef50_Q6MAN0 Cluster: Serine/threonine-protein kinase pknD; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Serine/threonine-protein kinase pknD - Protochlamydia
amoebophila (strain UWE25)
Length = 982
Score = 31.9 bits (69), Expect = 8.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 187 IWLYIYSRRFQDGGNFLTSYGNIIINQDES 98
+W Y+ + +QD GN L +Y +N+D S
Sbjct: 858 VWAYLLDKNWQDAGNLLYTYSVETLNKDSS 887
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,842,796
Number of Sequences: 1657284
Number of extensions: 5742877
Number of successful extensions: 16750
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 16402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16735
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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