Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0975
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    77   6e-15
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   1.6  
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427...    28   3.7  
03_02_0817 + 11492699-11492774,11493605-11493978                       28   3.7  
01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097           28   3.7  
01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858           28   3.7  
05_05_0309 - 23987669-23988042,23989485-23989560                       27   8.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 35/63 (55%), Positives = 48/63 (76%)
 Frame = +2

Query: 65  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 244
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 245 NIG 253
           ++G
Sbjct: 61  SVG 63


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +2

Query: 29  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 151
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>07_03_1738 -
           29141829-29141989,29142112-29142343,29142751-29142792,
           29143312-29143410,29143575-29143667,29143742-29143876,
           29144251-29144290,29144475-29144844,29146575-29146650
          Length = 415

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
           Q+P +A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79


>03_02_0817 + 11492699-11492774,11493605-11493978
          Length = 149

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
           Q+P +A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79


>01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097
          Length = 171

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
           Q+P +A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79


>01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858
          Length = 146

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
           Q+P +A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79


>05_05_0309 - 23987669-23988042,23989485-23989560
          Length = 149

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -1

Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
           Q+P +A++ D + ++DA  G G   +P +L + +++ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMAKKMKD 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,636
Number of Sequences: 37544
Number of extensions: 171241
Number of successful extensions: 521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)