Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0975
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-20
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.015
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)              29   2.9  
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            27   8.9  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      27   8.9  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 43/64 (67%), Positives = 54/64 (84%)
 Frame = +2

Query: 62  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 242 TNIG 253
            + G
Sbjct: 61  LSAG 64



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 364 SDDDMGFGLFD 396
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 241 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIINQDESR 95
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 259  LQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSY 128
            LQ D+G +VT +      G  T   W+ +YS    D G+F T Y
Sbjct: 2097 LQVDLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 364 SDDDMGFGLFD 396
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)
          Length = 960

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +2

Query: 29  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 208
           G+R++   +L +     ++ VY +L  +D ++ V GE  +    + AV     W      
Sbjct: 726 GVRKVKSGELDVFISDHISLVYESLNDLDCELKVVGEPFAMSGASLAVKKGSPWFNALND 785

Query: 209 ALEGINVRDLITNIGLEWV 265
            L+ +  +DL   I   WV
Sbjct: 786 VLQQLKSKDLTDFIQKFWV 804


>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
           Q+P +A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLTMMARKMKD 79


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 158 KAAAVDVEPYWPGLFAKALEGINVRDLITNIGLEWVLL 271
           + AAV+  P W G  A  +E   V D+  +  L+ +L+
Sbjct: 234 ECAAVEFLPKWKGFVAAGMEQDKVEDITLSQALDQILM 271


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 167 PPLSRWWKFSHQLRQHHHQ 111
           PP  RWW++ H LRQ  H+
Sbjct: 394 PP--RWWRYRHVLRQMGHR 410


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 246  LVIRSRTLMPSKA-LANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*TH 85
            L++ S  + P ++ LA  PGQ G+T+T   F+      PV    S+  +    TH
Sbjct: 1763 LIVPSPAIAPVQSQLATTPGQVGNTNT--LFRPASTMVPVQPAVSNETLHPAVTH 1815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,175
Number of Sequences: 59808
Number of extensions: 173603
Number of successful extensions: 450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)