Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0975
(508 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosom... 119 3e-27
AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p pro... 119 3e-27
AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA ... 119 3e-27
Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein ( Dros... 112 2e-25
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 29 3.6
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 29 4.8
AY113343-1|AAM29348.1| 1307|Drosophila melanogaster GH12701p pro... 29 4.8
AE014296-3443|AAF51654.2| 1307|Drosophila melanogaster CG32432-P... 29 4.8
Y00133-1|CAA68327.1| 148|Drosophila melanogaster protein ( Dros... 28 8.3
BT003282-1|AAO25039.1| 149|Drosophila melanogaster LD02334p pro... 28 8.3
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 28 8.3
AY118890-1|AAM50750.1| 149|Drosophila melanogaster LD01127p pro... 28 8.3
AY061391-1|AAL28939.1| 1712|Drosophila melanogaster LD31383p pro... 28 8.3
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 28 8.3
AE014298-1589|AAF48024.2| 1712|Drosophila melanogaster CG1657-PA... 28 8.3
AE013599-1432|AAF58543.1| 149|Drosophila melanogaster CG8472-PB... 28 8.3
AE013599-1431|AAF58542.1| 149|Drosophila melanogaster CG8472-PA... 28 8.3
>S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosomal
protein rpA2 protein.
Length = 112
Score = 119 bits (286), Expect = 3e-27
Identities = 56/64 (87%), Positives = 62/64 (96%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 242 TNIG 253
TNIG
Sbjct: 61 TNIG 64
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 364 SDDDMGFGLFD 396
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p
protein.
Length = 112
Score = 119 bits (286), Expect = 3e-27
Identities = 56/64 (87%), Positives = 62/64 (96%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 242 TNIG 253
TNIG
Sbjct: 61 TNIG 64
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 364 SDDDMGFGLFD 396
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA
protein.
Length = 112
Score = 119 bits (286), Expect = 3e-27
Identities = 56/64 (87%), Positives = 62/64 (96%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 242 TNIG 253
TNIG
Sbjct: 61 TNIG 64
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 364 SDDDMGFGLFD 396
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein (
Drosophila melanogastermRNA for A-type ribosomal protein
rp21C. ).
Length = 112
Score = 112 bits (270), Expect = 2e-25
Identities = 54/64 (84%), Positives = 60/64 (93%)
Frame = +2
Query: 62 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 241
M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE INV+DLI
Sbjct: 1 MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLI 60
Query: 242 TNIG 253
TNIG
Sbjct: 61 TNIG 64
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 364 SDDDMGFGLFD 396
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 243 VIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEI 142
+I S+ L+P+K N P QY T+ A K +I
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKI 288
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 234 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 106
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 410 SQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTK 452
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 234 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 106
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 410 SQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTK 452
>AY113343-1|AAM29348.1| 1307|Drosophila melanogaster GH12701p
protein.
Length = 1307
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 137 HQLRQHHHQPG*EQSKHMLIQLLTPFLVLNVQVAVGLSS 21
HQL+Q H Q +Q +H L LT L L + + + ++
Sbjct: 122 HQLQQQHQQSQHQQRRHPLPATLTLLLCLGISLGMAATA 160
>AE014296-3443|AAF51654.2| 1307|Drosophila melanogaster CG32432-PA
protein.
Length = 1307
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 137 HQLRQHHHQPG*EQSKHMLIQLLTPFLVLNVQVAVGLSS 21
HQL+Q H Q +Q +H L LT L L + + + ++
Sbjct: 122 HQLQQQHQQSQHQQRRHPLPATLTLLLCLGISLGMAATA 160
>Y00133-1|CAA68327.1| 148|Drosophila melanogaster protein (
Drosophila melanogastercalmodulin mRNA. ).
Length = 148
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
Q+P +A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 41 QNPTEAELQDMINEVDA-DGNGTIDFPEFLTMMARKMKD 78
>BT003282-1|AAO25039.1| 149|Drosophila melanogaster LD02334p
protein.
Length = 149
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
Q+P +A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLTMMARKMKD 79
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 234 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 106
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 333 SQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTK 375
>AY118890-1|AAM50750.1| 149|Drosophila melanogaster LD01127p
protein.
Length = 149
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
Q+P +A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLTMMARKMKD 79
>AY061391-1|AAL28939.1| 1712|Drosophila melanogaster LD31383p protein.
Length = 1712
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 200 TDLANMALHLQPPLSRWWKFSHQLRQHHHQ 111
+ ++N +L+L+ P K H R+HHH+
Sbjct: 969 SSISNQSLNLEEPPPPMGKHHHHHREHHHR 998
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 234 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 106
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 333 SQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTK 375
>AE014298-1589|AAF48024.2| 1712|Drosophila melanogaster CG1657-PA
protein.
Length = 1712
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 200 TDLANMALHLQPPLSRWWKFSHQLRQHHHQ 111
+ ++N +L+L+ P K H R+HHH+
Sbjct: 969 SSISNQSLNLEEPPPPMGKHHHHHREHHHR 998
>AE013599-1432|AAF58543.1| 149|Drosophila melanogaster CG8472-PB,
isoform B protein.
Length = 149
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
Q+P +A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLTMMARKMKD 79
>AE013599-1431|AAF58542.1| 149|Drosophila melanogaster CG8472-PA,
isoform A protein.
Length = 149
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 268 QHPLQADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 152
Q+P +A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLTMMARKMKD 79
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,542,331
Number of Sequences: 53049
Number of extensions: 286965
Number of successful extensions: 1042
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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