Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0974
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   2.0  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   3.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    26   4.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   6.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.0  

>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 4   HEITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVV 126
           HE+  + F ++ + LF  + +  + S+EG P  + L+ +++
Sbjct: 188 HEVDRWTFGILIAELFSNQALFDDGSSEGWPSELRLTSSII 228


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 189 HVLYH*EFIPQYNTIQ*PHERD--HSSGQYYRERHAFCA 79
           H+ YH +F P+    + P E    H +  ++ E H FCA
Sbjct: 307 HLDYHEQFSPRCKHCKTPIEDQAVHINNDWFHENHHFCA 345


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 400 QMYDNSEQNRAIDAPLSYLAN-PLPPTFLNRFEGRSIYSVF 281
           Q + +S++N   D P  +  N PL    L +F+G+ I S+F
Sbjct: 111 QRHRSSDENLNTDLPHIFCLNDPLDELTLIKFDGKKILSLF 151


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 132 ERDHSSGQYYRERHAFCALILN 67
           E  +  G YY  +HAFC+  LN
Sbjct: 511 ENGYIQGYYYDPKHAFCSQPLN 532


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 10   ITAFMFYLIASPLFGLKEIIQNK-STEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQN 186
            I AF+ + +   LFG+KE+  N     G      L  T   F+     + +  +++ + +
Sbjct: 1392 IQAFLVFYVTYSLFGMKELNDNNIFAYGQ-----LIFTAAIFIMNFKLVFIEMQYINIIS 1446

Query: 187  VVALVLCASQLSLFVIYPS 243
            ++ LVL +    LF I+ S
Sbjct: 1447 IIVLVLTSLAWFLFNIFIS 1465


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 374  VLLGVIVHLMRASRTDIYKYYIHCRFVVLVIIAINNIYC*LVDA 505
            ++L  + H+     T +YKYY+   FV   I A +  +  L+ +
Sbjct: 1468 IILNFLHHVSPDISTHLYKYYLRRNFVSSFIDAFSRAFSELLSS 1511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,742
Number of Sequences: 5004
Number of extensions: 59678
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)