Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0974
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_20248| Best HMM Match : GPS (HMM E-Value=1.5)                       32   0.52 
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           29   4.9  
SB_15087| Best HMM Match : RnaseH (HMM E-Value=4.8)                    28   6.4  
SB_46540| Best HMM Match : RVT_1 (HMM E-Value=4.8e-27)                 28   8.5  
SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)                   28   8.5  

>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +1

Query: 37  ASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIIL 159
           ASPL  +  +I+ KSTE M F      T+ +F+WL YG ++
Sbjct: 137 ASPLATVARVIRTKSTESMQFTFSFLITLCSFVWLCYGTVI 177


>SB_20248| Best HMM Match : GPS (HMM E-Value=1.5)
          Length = 555

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 371 SVLLGVIVHLMRASRTDIYKYYIHCRFVV 457
           S+LLGVI H  RAS  D  K+Y H + VV
Sbjct: 156 SILLGVIYHPPRASTDDNTKFYEHIQSVV 184


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 371 SVLLGVIVHLMRASRTDIYKYYIHCRFVV 457
           S++LGVI H   A   D  K Y H ++VV
Sbjct: 225 SIVLGVIYHPPHAKADDYQKLYDHMQYVV 253


>SB_15087| Best HMM Match : RnaseH (HMM E-Value=4.8)
          Length = 326

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 230 TKSDSCDAHSTKATTFCTTKNLFLNIIPYSSHMNVT 123
           T SD C+  + +   +C  +NL+L       H+NVT
Sbjct: 135 TPSDLCNQMTRETLLWCKQRNLWLKSSHLPGHLNVT 170


>SB_46540| Best HMM Match : RVT_1 (HMM E-Value=4.8e-27)
          Length = 751

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 371 SVLLGVIVHLMRASRTDIYKYYIH 442
           S+LLGVI H  RAS  D  K Y H
Sbjct: 93  SILLGVIYHPPRASTDDNTKLYEH 116


>SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 371 SVLLGVIVHLMRASRTDIYKYYIH 442
           S+LLGVI H  RAS  D  K Y H
Sbjct: 21  SILLGVIYHPPRASTDDNTKLYEH 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,354,810
Number of Sequences: 59808
Number of extensions: 441921
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)