Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0974
(704 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein. 52 3e-06
BC005943-1|AAH05943.1| 221|Homo sapiens recombination activatin... 52 3e-06
AL691442-9|CAI15324.1| 166|Homo sapiens recombination activatin... 52 3e-06
AL691442-8|CAI15323.1| 221|Homo sapiens recombination activatin... 52 3e-06
AL691442-6|CAI15321.1| 156|Homo sapiens recombination activatin... 52 3e-06
AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein is... 52 3e-06
AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein pr... 52 3e-06
BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein. 44 5e-04
AL691442-7|CAI15322.1| 167|Homo sapiens recombination activatin... 44 5e-04
AB065541-1|BAC05786.1| 312|Homo sapiens seven transmembrane hel... 30 7.0
>CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein.
Length = 221
Score = 51.6 bits (118), Expect = 3e-06
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 13 TAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVV 192
+ F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N
Sbjct: 134 SVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFP 193
Query: 193 ALVLCASQLSLFVIYP 240
+V + LF YP
Sbjct: 194 GIVTSFIRFWLFWKYP 209
>BC005943-1|AAH05943.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 51.6 bits (118), Expect = 3e-06
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 13 TAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVV 192
+ F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N
Sbjct: 134 SVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFP 193
Query: 193 ALVLCASQLSLFVIYP 240
+V + LF YP
Sbjct: 194 GIVTSFIRFWLFWKYP 209
>AL691442-9|CAI15324.1| 166|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 166
Score = 51.6 bits (118), Expect = 3e-06
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 13 TAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVV 192
+ F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N
Sbjct: 79 SVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFP 138
Query: 193 ALVLCASQLSLFVIYP 240
+V + LF YP
Sbjct: 139 GIVTSFIRFWLFWKYP 154
>AL691442-8|CAI15323.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 51.6 bits (118), Expect = 3e-06
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 13 TAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVV 192
+ F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N
Sbjct: 134 SVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFP 193
Query: 193 ALVLCASQLSLFVIYP 240
+V + LF YP
Sbjct: 194 GIVTSFIRFWLFWKYP 209
>AL691442-6|CAI15321.1| 156|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 156
Score = 51.6 bits (118), Expect = 3e-06
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 13 TAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVV 192
+ F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N
Sbjct: 69 SVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFP 128
Query: 193 ALVLCASQLSLFVIYP 240
+V + LF YP
Sbjct: 129 GIVTSFIRFWLFWKYP 144
>AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein
isoform protein.
Length = 179
Score = 51.6 bits (118), Expect = 3e-06
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 13 TAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVV 192
+ F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N
Sbjct: 92 SVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFP 151
Query: 193 ALVLCASQLSLFVIYP 240
+V + LF YP
Sbjct: 152 GIVTSFIRFWLFWKYP 167
>AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein
protein.
Length = 221
Score = 51.6 bits (118), Expect = 3e-06
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 13 TAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVV 192
+ F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N
Sbjct: 134 SVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFP 193
Query: 193 ALVLCASQLSLFVIYP 240
+V + LF YP
Sbjct: 194 GIVTSFIRFWLFWKYP 209
>BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein.
Length = 167
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 61 EIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCASQLSLFVIYP 240
++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N +V + LF YP
Sbjct: 96 KVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 155
>AL691442-7|CAI15322.1| 167|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 167
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 61 EIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCASQLSLFVIYP 240
++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N +V + LF YP
Sbjct: 96 KVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 155
>AB065541-1|BAC05786.1| 312|Homo sapiens seven transmembrane helix
receptor protein.
Length = 312
Score = 30.3 bits (65), Expect = 7.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 19 FMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNK----FLVVQN 186
F+ + S + L I+ K + P+ + FM L Y + K F+V +N
Sbjct: 31 FLMIYVISVMGNLGMIVLTKLDSRLQTPMYFFLRHLAFMDLGYSTTVGPKMLVNFVVDKN 90
Query: 187 VVALVLCASQLSLFVIY 237
+++ CA+QL+ F+++
Sbjct: 91 IISYYFCATQLAFFLVF 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,182,745
Number of Sequences: 237096
Number of extensions: 2179198
Number of successful extensions: 4047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4047
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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