Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0974
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    71   6e-13
AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical ...    59   3e-09
AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical pr...    53   2e-07
AF039047-4|AAB94225.1|  224|Caenorhabditis elegans Hypothetical ...    42   3e-04
Z81109-16|CAB03252.2|  221|Caenorhabditis elegans Hypothetical p...    38   0.007
Z70755-4|CAA94783.2|  239|Caenorhabditis elegans Hypothetical pr...    30   1.9  

>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 29/69 (42%), Positives = 49/69 (71%)
 Frame = +1

Query: 34  IASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCAS 213
           +A+PLF + ++++NKS+E +P P+ ++  VV   W+ YG I+ +  ++V NV+A V+   
Sbjct: 143 VAAPLFDIGKVVRNKSSESLPLPLCVACFVVCLQWMFYGYIVDDIVILVPNVIATVISIL 202

Query: 214 QLSLFVIYP 240
           QLSLF+IYP
Sbjct: 203 QLSLFIIYP 211


>AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical
           protein C54F6.4 protein.
          Length = 233

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 25/67 (37%), Positives = 45/67 (67%)
 Frame = +1

Query: 40  SPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCASQL 219
           SPL GL+ +++++    +PF + L   +V  +W LYGI++++ FLV+   V +++   QL
Sbjct: 126 SPLAGLRVVLRDREVITLPFVLCLVQLIVQCLWNLYGILIQDFFLVIPTAVGIMISLVQL 185

Query: 220 SLFVIYP 240
           SLF+I+P
Sbjct: 186 SLFLIFP 192


>AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical
           protein K02D7.5 protein.
          Length = 299

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 20/67 (29%), Positives = 42/67 (62%)
 Frame = +1

Query: 40  SPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCASQL 219
           +PL GL  +++N+    +P P+ ++  +V+  W LYG ++ + ++++ N + + L   QL
Sbjct: 136 APLAGLGVVLKNREVSTLPLPMCVANFLVSSQWCLYGNLVSDIYIIIPNGIGMFLAIVQL 195

Query: 220 SLFVIYP 240
           +LFV+ P
Sbjct: 196 ALFVVLP 202



 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 88  GMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCASQLSLFVIY 237
           G+PF   L G +    WL YG++  +  +++ NVV +   A     F+IY
Sbjct: 42  GVPF---LMGVLGGSFWLRYGLLKMDYVMIIVNVVGVACMAFYCVFFLIY 88


>Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical
           protein C06G8.1 protein.
          Length = 355

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/68 (32%), Positives = 42/68 (61%)
 Frame = +1

Query: 37  ASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCASQ 216
           A+PL G++ +I+  +T  +P P+ ++  +V+  W LYG++  + +L+  N V  +L   Q
Sbjct: 143 AAPLGGIRVVIRRWATSTLPLPLCIANFLVSTEWFLYGLLKNDFYLIFPNGVGSLLAFIQ 202

Query: 217 LSLFVIYP 240
           L LF++ P
Sbjct: 203 LLLFIVLP 210


>AF039047-4|AAB94225.1|  224|Caenorhabditis elegans Hypothetical
           protein K11D12.5 protein.
          Length = 224

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/75 (28%), Positives = 40/75 (53%)
 Frame = +1

Query: 16  AFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVA 195
           A +F L+   ++ +K  I   +TE +P     +   +   WLL+GI+  N+F+ + N   
Sbjct: 129 AQIFSLVGG-IYEIKRAISMGTTEYIPAGFQFAIFTLILQWLLFGILHGNQFIAISNAAG 187

Query: 196 LVLCASQLSLFVIYP 240
           L++  + L+L+  YP
Sbjct: 188 LLVNIATLALYFFYP 202


>Z81109-16|CAB03252.2|  221|Caenorhabditis elegans Hypothetical
           protein R10D12.9 protein.
          Length = 221

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +1

Query: 46  LFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCASQLSL 225
           ++ ++  ++  +TE +P  +  + + +   WLL+GI+  N+F+   NV  L   A  L L
Sbjct: 138 VYEMRRAVKLGTTEYIPAFMQFAVSALMAQWLLFGIVTGNQFIANANVAGLTASAITLYL 197

Query: 226 FVIYP 240
           +  YP
Sbjct: 198 YFKYP 202


>Z70755-4|CAA94783.2|  239|Caenorhabditis elegans Hypothetical
           protein K06A4.4 protein.
          Length = 239

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/59 (22%), Positives = 33/59 (55%)
 Frame = +1

Query: 67  IQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALVLCASQLSLFVIYPS 243
           + +K  + +P   ++   V+    ++Y I + + ++++ NV+   +  S LS+F +YP+
Sbjct: 165 VTSKCIDFVPLAPVVFTWVMELHAIVYSIGIDDFYMLLANVIFFCMDGSLLSMFFVYPT 223



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 31  LIASPLFGLKEIIQNKSTEG-MPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVAL 198
           LI SP+  + + ++ +S++   P P I +  + + +WL Y I LR+  L++    A+
Sbjct: 37  LITSPVQAVHKWVRRQSSDSDTPIPYICA-VIGSALWLRYSIFLRDTKLILLQTYAV 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,434
Number of Sequences: 27780
Number of extensions: 335220
Number of successful extensions: 744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)