Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0974
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   8.6  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 135 HERDHSSGQYYRERHAFCALILNDLFQSKKR*SYQVEH 22
           H+  H+S +Y RER   C+   N  ++ K R  Y+  H
Sbjct: 222 HDFQHTSSRYSRERR--CSRDRNREYRKKDR-QYEKLH 256


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 135 HERDHSSGQYYRERHAFCALILNDLFQSKKR 43
           H+  H+S +Y RER   C+   N  ++ K R
Sbjct: 222 HDFQHTSSRYSRERS--CSRDRNREYKEKDR 250


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 484 NIVDGNNN*HNESAMDIIFVYVRPARTHQM 395
           N+VD N N + ++  DI+   +    T Q+
Sbjct: 71  NVVDENGNFNEKNTRDIVQAVLDDNETDQL 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,557
Number of Sequences: 438
Number of extensions: 4704
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)