Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0973
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6S5G0 Cluster: Putative uncharacterized protein; n=2; ...    36   0.93 
UniRef50_UPI0000D578FB Cluster: PREDICTED: similar to RNA-direct...    33   4.9  
UniRef50_A0KN45 Cluster: Small Conductance Mechanosensitive Ion ...    33   6.5  
UniRef50_A7T080 Cluster: Predicted protein; n=1; Nematostella ve...    33   6.5  
UniRef50_Q3A2F6 Cluster: Uncharacterized CBS domain-containing p...    33   8.6  
UniRef50_A6DLK6 Cluster: Putative Metal-dependent protein hydrol...    33   8.6  

>UniRef50_A6S5G0 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 2467

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +1

Query: 256 LFKQKLRWCQDRQEQIKMDSLASHHSANNFPQFWKDTGKFNQKPGLPVSINGIFDHHLIA 435
           L + ++ W  D ++ +     + ++   N+P+FW DTG +  K  +   +NG +D     
Sbjct: 196 LTEHEVLWRNDNRQYLDFSFGSKYNETCNYPRFWLDTG-YTVKEDVTDLMNGCYDSEFDQ 254

Query: 436 NAFSKHFKVTP--QRNTGVFRS 495
              ++ F V P  QR    F S
Sbjct: 255 YGDTEAFGVFPDWQRQLSKFAS 276


>UniRef50_UPI0000D578FB Cluster: PREDICTED: similar to RNA-directed
           DNA polymerase from mobile element jockey (Reverse
           transcriptase), partial; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to RNA-directed DNA polymerase from
           mobile element jockey (Reverse transcriptase), partial -
           Tribolium castaneum
          Length = 407

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 531 SFTSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
           SFT +E+      ++ GK+PG DG    ++       P +++ V N L
Sbjct: 144 SFTLEEIHAAAGKLNTGKAPGDDGILPEVVIAAVEAIPEIILAVMNKL 191


>UniRef50_A0KN45 Cluster: Small Conductance Mechanosensitive Ion
           Channel (MscS) Family Protein; n=2; Aeromonas|Rep: Small
           Conductance Mechanosensitive Ion Channel (MscS) Family
           Protein - Aeromonas hydrophila subsp. hydrophila (strain
           ATCC 7966 / NCIB 9240)
          Length = 1092

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 492 VARCWNIIQKRDISFTSKEVKRVINSMHRGKSPGYDGSASSILGMLEST 638
           +A  W +IQ+R ++F   + KR      RG+  G+D  +S I  ++E T
Sbjct: 725 LAHRWMLIQRRRLAFERAKSKRAEILAQRGREEGHDELSSEIPDVVEDT 773


>UniRef50_A7T080 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 70

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
           T +E+++ I++   GKSPG+DG    ++ +    C R  +L+  N+
Sbjct: 3   TDQELEKAISNTKLGKSPGFDGVLPEVI-VYGGRCLRAFLLILFNI 47


>UniRef50_Q3A2F6 Cluster: Uncharacterized CBS domain-containing
           protein; n=2; Desulfuromonadales|Rep: Uncharacterized
           CBS domain-containing protein - Pelobacter carbinolicus
           (strain DSM 2380 / Gra Bd 1)
          Length = 417

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 525 DISFTSKEVKRVINSMHRGKSPGYDGSASSILGMLES 635
           D+SF+  EV R++      + P Y+GS  +++G++ S
Sbjct: 214 DVSFSFAEVLRLVQQSSHSRFPIYEGSLDNVIGIIHS 250


>UniRef50_A6DLK6 Cluster: Putative Metal-dependent protein
           hydrolase; n=1; Lentisphaera araneosa HTCC2155|Rep:
           Putative Metal-dependent protein hydrolase -
           Lentisphaera araneosa HTCC2155
          Length = 306

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +1

Query: 397 VSINGIFDHHLIANAFSKHFKVTPQRNTGVFRSPVAGTSSRKGISVLHRRRLKELLTACI 576
           V + GI+D    +N F  HF   P  N G+  S       + G  +   R +KE + + +
Sbjct: 56  VDVGGIYDEE--SNRFDHHFSNGPAYNDGLLMSSFGLVWQKFGEQICGLREIKENIQSSL 113

Query: 577 EVNPLDMMD 603
            V P+D  D
Sbjct: 114 -VRPVDAAD 121


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,454,428
Number of Sequences: 1657284
Number of extensions: 15226909
Number of successful extensions: 35020
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35013
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)