Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0973
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    28   1.5  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   5.9  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   5.9  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 281 HHLNFCLNNSYFLPCQHTSDHS 216
           + L  C N  Y   C H SDHS
Sbjct: 96  YELTLCANCGYLFCCNHESDHS 117


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 593  SRGFTSMHAVNNSFNLLRCKTDIPFL 516
            S G +S+  V    +LLRC T +P +
Sbjct: 1094 SNGISSLDFVAEQISLLRCSTTLPII 1119


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 263 LNNSYFLPCQHTSDHS*ACHLPPRPKTSTWPPYGNLQHICSIPQHNHPSFEA 108
           L N   LP +  + H+   H+P   K       GN++     P+ + P  +A
Sbjct: 191 LENIETLPSKEDAQHARVAHIPIEEKQEDSEKEGNIKEAFVPPKFDQPERDA 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,220
Number of Sequences: 5004
Number of extensions: 63092
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)