Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0973
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0172 - 9165904-9166428                                           30   1.5  
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215...    29   4.6  
09_04_0271 + 16271569-16271767,16272072-16272206,16272286-162725...    28   6.0  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    28   6.0  
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287           28   8.0  
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143...    28   8.0  

>05_03_0172 - 9165904-9166428
          Length = 174

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 205 IFHPGLKPRLGLPMVTYNIFVPSRNITTPPSRLDPFTSSCCCI 77
           I HP +   +G  M T ++ +P    T PP    P  + CC +
Sbjct: 96  IDHPNITKFVGASMATADLNIPQGQSTAPPLPPPPPDTPCCVV 138


>12_02_0803 +
           23318429-23318552,23318688-23319877,23320724-23321528,
           23321938-23322417,23322535-23322815,23323207-23323302,
           23323423-23323548,23324100-23325890
          Length = 1630

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 242 PCQHTSDHS*--ACHLP-PRPKTSTWPPYGNLQHICSIPQH 129
           P QH   H+   + H    +P  S W PYG  QHI  +P +
Sbjct: 843 PWQHVEHHAWRKSKHTKHSKPSFSGWIPYGLFQHILPVPTY 883


>09_04_0271 +
           16271569-16271767,16272072-16272206,16272286-16272548,
           16272865-16272996,16273083-16273199,16273752-16273904,
           16274417-16274529,16274600-16274753,16274900-16275118
          Length = 494

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 238 HGRK*ELFKQKLRWCQDR-QEQIKMDSLASHHSANNFPQFWKDTGKFNQKPGLPVSIN 408
           HG K  LF   L W  D  +  +++D   S +S  N  +     G+FN+  G PVS N
Sbjct: 90  HGAKNGLFVVTLGWLVDCVRRSMRLDE--SLYSIKNIGENGMPLGEFNRLVGAPVSGN 145


>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
            8812361-8812492,8812681-8812864,8813002-8813135,
            8813552-8813656,8813738-8813839,8813930-8814022,
            8814136-8814456,8814595-8814696,8814791-8814853,
            8815213-8815708,8815964-8816124,8816213-8816743,
            8817077-8817118,8817203-8817334,8817639-8817703,
            8817858-8818169,8818262-8818334,8818425-8818517,
            8819440-8819501,8819740-8819809
          Length = 1777

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 364  TGKFNQKPGLPVSINGIFDHHLIANAFSKHFKVTPQRNTGVFRS-PVAGTSSRKGIS 531
            +  FN KPG P   +   ++    N+ S     TP     V  S P+A  + RK +S
Sbjct: 1299 SSSFNSKPGSPAISSNSAENSSNPNSLSASPATTPAAAKAVLSSAPIASQTVRKALS 1355


>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
          Length = 540

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 212 ACHLPPRPKTSTWPPYGNLQHICSIPQHN 126
           A  LPP PK   WP  GNL  I S+P  +
Sbjct: 32  AYKLPPGPKP--WPIIGNLNLISSLPHRS 58


>04_03_0517 +
           16712487-16712570,16713715-16714059,16714149-16714301,
           16714889-16714972,16715426-16715479,16715552-16715647,
           16716163-16716258,16716941-16717086,16717650-16717799,
           16717889-16718018,16718128-16718787,16718881-16718979,
           16719058-16719210,16719323-16720054,16720338-16720640
          Length = 1094

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 516 QKRDISFTSKEVKRVINSMHRGKSPGYDGSASS 614
           ++ D++   ++++++ + +HR KS G DGS  S
Sbjct: 431 KEEDVNMLREQIRQLKDELHRMKSGGSDGSNGS 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,823,893
Number of Sequences: 37544
Number of extensions: 435001
Number of successful extensions: 1005
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)