Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0973
(687 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 29 4.5
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 29 4.5
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 29 4.5
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 29 4.5
AY069521-1|AAL39666.2| 958|Drosophila melanogaster LD23810p pro... 29 6.0
AE013599-3105|AAF46654.1| 957|Drosophila melanogaster CG9346-PA... 29 6.0
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 29 7.9
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 29 7.9
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 29 7.9
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 29 7.9
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 29 7.9
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 29 7.9
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 29 7.9
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T E+ +INS+ K+PG D + + L + LIL++NN+
Sbjct: 38 TLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNI 83
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T E+ +INS+ K+PG D + + L + LIL++NN+
Sbjct: 485 TLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNI 530
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T E+ +INS+ K+PG D + + L + LIL++NN+
Sbjct: 485 TLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNI 530
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T E+ +INS+ K+PG D + + L + LIL++NN+
Sbjct: 485 TLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNI 530
>AY069521-1|AAL39666.2| 958|Drosophila melanogaster LD23810p
protein.
Length = 958
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 253 ELFKQKLRWCQD-RQEQIKMDSLASHHSA 336
ELFK++LR Q+ R+E+ K +AS HSA
Sbjct: 147 ELFKEELRQIQEEREERHKYKHMASSHSA 175
>AE013599-3105|AAF46654.1| 957|Drosophila melanogaster CG9346-PA
protein.
Length = 957
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 253 ELFKQKLRWCQD-RQEQIKMDSLASHHSA 336
ELFK++LR Q+ R+E+ K +AS HSA
Sbjct: 146 ELFKEELRQIQEEREERHKYKHMASSHSA 174
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T KE+ I ++ K+PG D + ++ L + LIL++N++
Sbjct: 482 TLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSI 527
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T KE+ I ++ K+PG D + ++ L + LIL++N++
Sbjct: 366 TLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSI 411
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 516 QKRDISFTSKEVKRVI-NSMHRGKSPGYDGSASSILGMLESTCPRVLILVFN 668
Q I F KE+ ++I +++ KSPGYD ++ L + R + +FN
Sbjct: 427 QHTPIVFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFN 478
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T KE+ I ++ K+PG D + ++ L + LIL++N++
Sbjct: 482 TLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSI 527
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T KE+ I ++ K+PG D + ++ L + LIL++N++
Sbjct: 482 TLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSI 527
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T KE+ I ++ K+PG D + ++ L + LIL++N++
Sbjct: 444 TLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSI 489
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 537 TSKEVKRVINSMHRGKSPGYDGSASSILGMLESTCPRVLILVFNNL 674
T KE+ I ++ K+PG D + ++ L + LIL++N++
Sbjct: 482 TLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSI 527
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,774,123
Number of Sequences: 53049
Number of extensions: 729222
Number of successful extensions: 1612
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -