Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0973
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = +1

Query: 286 DRQEQIKMDSLASHHSANN--FPQFWKDTGKFNQKPGLPVSIN----GIFDHHLIANAFS 447
           D Q    ++++A+H   +       WKD         +  S       I DHH  + +F 
Sbjct: 311 DVQRYNLLETIATHMGLDTRTSTSLWKDKAMIEANVAVLHSFQMKNVTIVDHHTASESFM 370

Query: 448 KHFK 459
           KH++
Sbjct: 371 KHYE 374


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 72  CWMQQQLLVKGSSLEGGVVMLRDGTNML*VTIGRPSRGFRPGWKMAS 212
           CW    L   GSS  GGVV    G +   + +G  + G   G  +AS
Sbjct: 13  CWCCDNLGGPGSSSAGGVVTGASGGS---IVVGANNGGGGGGLGIAS 56


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 510 CSSNGRPKHTSITLRCHLEVFTKRICNQVMIKNTINTHR 394
           CS N +     +T+R HLE+  + I + +     + T +
Sbjct: 242 CSGNCKLNDILLTVRPHLELTFENILSHINTVYVLRTKK 280


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 424 HLIANAFSKHFKVTPQRNTG 483
           HL+A  F K  +VTP+   G
Sbjct: 115 HLLAQLFLKSTEVTPRDGLG 134


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 510 CSSNGRPKHTSITLRCHLEVFTKRICNQVMIKNTINTHR 394
           CS N +     +T+R HLE+  + I + +     + T +
Sbjct: 242 CSGNCKLNDILLTVRPHLELTFENILSHINTVYVLRTKK 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,748
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)