Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0973
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20070.1 68418.m02390 MutT/nudix family protein low similarit...    29   3.8  
At5g08540.1 68418.m01016 expressed protein similar to unknown pr...    29   3.8  
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl...    27   8.8  

>At5g20070.1 68418.m02390 MutT/nudix family protein low similarity
           to SP|Q19427 NADH pyrophosphatase (EC 3.6.1.-)
           {Caenorhabditis elegans}; contains Pfam profile PF00293:
           NUDIX domain
          Length = 438

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = -1

Query: 522 FSG*CSSNGRPKHTSITLRCHLEVFTKRI---CNQVMIKNTINTHRKARFLVKFSGIFPE 352
           F G C S   PK      +C  E   KR+    + V+I   I+       L + S   P 
Sbjct: 211 FCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALLSRQSRYVPR 270

Query: 351 LWEIISGMM 325
           +W  ++G +
Sbjct: 271 MWSCLAGFI 279


>At5g08540.1 68418.m01016 expressed protein similar to unknown
           protein (pir||T27191)
          Length = 346

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 197 VEDGKPKNGQTYVDMVESRSCLSRS*DGARIGRNKLKW 310
           VE+  P   +  +D+VE    +S++  G R+G +KL W
Sbjct: 80  VEEDMPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPW 117


>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 385

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 528 YPFSG*CSSNGRPKHTSITLRCHLEVFTKRICNQVMIKNT 409
           YPF G    NG     S T +  L+     I N +++KNT
Sbjct: 26  YPFVGALCMNGGDVDNSYTTKSLLQKRVLSITNPILVKNT 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,301
Number of Sequences: 28952
Number of extensions: 341935
Number of successful extensions: 831
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)