Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0972
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.21 
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    29   0.85 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.0  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   7.9  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +1

Query: 85  LEEQLYNSIVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 252
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 26/97 (26%), Positives = 41/97 (42%)
 Frame = +1

Query: 61   DSDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYA 240
            DS     + +E     I V + D A+E      EE+K   +T VV+ +I N  +    Y 
Sbjct: 1051 DSCTAYGVWDESWAQKISVVNGDLALENWG--IEERKWNKLTEVVDYVIHNGALVHWVYP 1108

Query: 241  YQLWLRAPRTSSVIVSQLSSDLSSPKTPLSLCTSATV 351
            Y   LR P     I +     L   K+   + +++TV
Sbjct: 1109 YSK-LRGPNVMGTITALKLCSLGKGKSLSFVSSTSTV 1144


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 94  QLYNSIVVADYDSAVEKSKHLYEEKKS 174
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 262 PRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 354
           P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 570 PSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 510 IWYWESVLTRTATTWAFGVNSVDSFRAQWYLQPAKYDKDNLFYI 641
           I+Y   V  +T T+    +N++  F  +W +QP K D  N+  +
Sbjct: 148 IYYAAKVYRKTKTSHKKRLNTMVYFLREWSIQP-KLDHPNILKV 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,441
Number of Sequences: 5004
Number of extensions: 50558
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)