Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0972
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    33   0.16 
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701...    33   0.16 
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           28   6.2  
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927...    28   8.2  

>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 273 RCPWSPEPKLIGVLHAVHLVVSYQFV 196
           RC WSP+  ++GV  + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455


>06_03_1511 - 30669292-30669401,30669894-30669930,30670012-30670107,
            30670186-30670281,30670679-30670828,30670956-30671100,
            30671178-30671251,30671325-30671445,30671697-30671821,
            30671898-30672047,30672249-30672324,30672496-30672557,
            30672597-30672839,30673354-30673683,30673776-30673932,
            30674008-30674139,30674219-30674277,30674734-30674798,
            30674878-30675094,30675413-30675499,30675655-30675750,
            30675938-30676003,30676096-30676287,30676380-30676532,
            30676812-30677052,30677322-30677515,30678212-30678348,
            30678474-30678480,30678708-30678830,30679370-30679427,
            30680018-30680090,30680493-30681765
          Length = 1714

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = -3

Query: 452  NELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITD 273
            NEL ++    F+L V     +I  +NI+ QR S   + V+  N + G+     +++ I +
Sbjct: 895  NELKSEELESFLLVVDGANFSIPELNILMQRYSGACSWVNHANNIVGKLLERNDYDNIVE 954

Query: 272  DVLGAL 255
            ++ G L
Sbjct: 955  ELTGIL 960


>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 335 HKLNGVFGEDKSELNWETITDDVLGA 258
           ++L G  GED++ LNWET     LGA
Sbjct: 455 NELIGKRGEDRTPLNWETRVRIALGA 480


>06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,
            9278433-9278564,9278641-9278715,9279056-9279133,
            9279215-9279327,9279421-9279535,9280565-9280754,
            9281355-9281464,9281559-9281654,9281756-9281818,
            9281911-9281988,9282452-9282564,9282664-9282721,
            9282797-9282920,9282999-9283060,9283131-9283195,
            9283264-9283324,9284242-9284307,9284472-9284531,
            9284830-9284960,9285517-9285592,9285701-9285769,
            9286065-9286112,9286552-9286671,9286918-9287034,
            9287290-9287405,9288348-9288519,9289057-9289100,
            9290359-9290712,9291680-9291806
          Length = 1072

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 124  YDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLRAPRTS 273
            YD  + K+  L E K S+ +TN+  KL  ++++   EY  Q    + RT+
Sbjct: 1017 YDDDLAKADSLNEVKLSDFLTNIFVKLWESDRL-LFEYLCQALTDSQRTA 1065


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,372
Number of Sequences: 37544
Number of extensions: 336099
Number of successful extensions: 1063
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)