Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0972
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)         30   1.6  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_24478| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    28   6.3  
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 345 DGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVY 479
           D L   L +  HG DG L F D ++ TS +++  F  +W+  + +
Sbjct: 127 DCLLYILFSPGHGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYH 171


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 59  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 190
           +IPTS     R SFTI   +P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 59  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 190
           +IPTS     R SFT+   +P + VR  R S +T  RR  +S++
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRV 188


>SB_24478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 165 EEERSHHKCSEQTDTKQQDELHGVRLSTLAQGSKDIVRDCFPVEFRLIFAENAIKLMYKR 344
           E+E        +T T++Q+E+  V  ST+   S  I+++   +EFR +      KL+  +
Sbjct: 339 EKEEELFLALMETATRKQEEIKEVIKSTIENLSPQILKEVESLEFRGVECSGEQKLLNPK 398

Query: 345 D 347
           D
Sbjct: 399 D 399


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 165  EEERSHHKCSEQTDTKQQDELHGVRLSTLAQGSKDIVRDCFP 290
            EEE + H    +   K+ DE  G+RL TL +  +D++RD  P
Sbjct: 1516 EEEVAKHLDQLKNIEKELDE-QGIRLQTLHKTGEDLLRDGDP 1556


>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +1

Query: 64  SDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAY 243
           SDVP  +     Y +  + D DSA + S       KS +  N V +        C   + 
Sbjct: 42  SDVPEPVAASTPYQTRELRDMDSANDGSSLKKHTDKSNMAHNAVERFSTETTSVCRSVSE 101

Query: 244 QLWLRAPRTSSVIVSQLSSD 303
           +   + P +S ++  +  SD
Sbjct: 102 ESQSQEPISSVLVHDESFSD 121


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +1

Query: 217  KMNCMEYAYQLWLRAPRTSSVIVSQLSSDLSSPKTPLSLCTSATVSL*R*VMMFTATMAD 396
            KM C +Y Y   L   + S +  S +SS  S   +P++   S+ V   R   M   T  D
Sbjct: 1341 KMGCNQYLYNDHLLTVQDSFINTSDISSQSSLSFSPVTSIRSSAVKSTR--SMDNVTTDD 1398

Query: 397  LP 402
            LP
Sbjct: 1399 LP 1400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,921,737
Number of Sequences: 59808
Number of extensions: 391968
Number of successful extensions: 4215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4215
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)