Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0972
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY363099-1|AAQ24172.1|  837|Homo sapiens normal early placenta p...    30   9.1  
AB033114-1|BAA86602.1| 1245|Homo sapiens KIAA1288 protein protein.     30   9.1  
AB018288-1|BAA34465.1|  909|Homo sapiens KIAA0745 protein protein.     30   9.1  

>AY363099-1|AAQ24172.1|  837|Homo sapiens normal early placenta
           protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +1

Query: 154 LYEEKKSEVITNVV-----NKLIRNNKMNCMEYAYQLWLRAPRTSSVIVSQLSSDLSSPK 318
           L  +KK+E++ N       NKLI +  ++   ++     R PRT+S + S    D+    
Sbjct: 561 LNADKKAEILINKTRKQQFNKLITSQAVHVTTHSKNASHRVPRTTSAVKSN-QEDVDKAS 619

Query: 319 TPLSLCTSATVS 354
           +  S C + +VS
Sbjct: 620 SSNSACETGSVS 631


>AB033114-1|BAA86602.1| 1245|Homo sapiens KIAA1288 protein protein.
          Length = 1245

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +1

Query: 154 LYEEKKSEVITNVV-----NKLIRNNKMNCMEYAYQLWLRAPRTSSVIVSQLSSDLSSPK 318
           L  +KK+E++ N       NKLI +  ++   ++     R PRT+S + S    D+    
Sbjct: 536 LNADKKAEILINKTHKQQFNKLITSQAVHVTTHSKNASHRVPRTTSAVKSN-QEDVDKAS 594

Query: 319 TPLSLCTSATVS 354
           +  S C + +VS
Sbjct: 595 SSNSACETGSVS 606


>AB018288-1|BAA34465.1|  909|Homo sapiens KIAA0745 protein protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +2

Query: 47  LCMLQIPTSLTTFWRSSFTIASSLPITTV 133
           LC +QIPTS    WRS+F  +S+L ++T+
Sbjct: 247 LCTVQIPTS----WRSAFLDSSTLQLSTI 271


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,609,702
Number of Sequences: 237096
Number of extensions: 1809686
Number of successful extensions: 4938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4938
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)