Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0972
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.4  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   3.2  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   3.2  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016678-2|AAB66153.1|  432|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 121 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 231
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 121 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 231
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +1

Query: 1    PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 168
            P +K V+V LC+   +LY + S     + + EQLY  +S+  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 169  KSEVITNVVNKLIRNNKMNCMEYAY 243
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +1

Query: 1    PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 168
            P +K V+V LC+   +LY + S     + + EQLY  +S+  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 169  KSEVITNVVNKLIRNNKMNCMEYAY 243
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 381 GNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYF---KILNTERNHIWYWESVLTRTAT 548
           G   RL  G      +  +SW+F    ++NKV+     +  T R++ +  E+VL+ T T
Sbjct: 599 GKSARLVCGTLSSNPAAHISWQFSRATDDNKVHLGDVSLNETTRDNGFNVENVLSFTPT 657


>AF016678-2|AAB66153.1|  432|Caenorhabditis elegans Hypothetical
           protein K07E8.7 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 471 KVYFKILNTERNHIWYWESVLTRTATTWAFGVNSVDSFRAQWYLQPAKYDK 623
           KV FKI++  R+   YW    TRT   W  G   V+ F  ++      Y K
Sbjct: 55  KVPFKIVDGVRHLAPYWACYRTRTKGRW-IGRKMVEVFSGEFLSTNRNYAK 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,903
Number of Sequences: 27780
Number of extensions: 285811
Number of successful extensions: 977
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)