Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0972
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 34 0.079
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 31 0.97
At5g63450.1 68418.m07965 cytochrome P450, putative 29 2.2
At4g39510.1 68417.m05587 cytochrome P450 family protein contains... 29 2.2
At5g64820.1 68418.m08155 hypothetical protein 29 3.9
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 3.9
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 28 5.2
At5g10060.1 68418.m01165 expressed protein 28 5.2
At2g04620.1 68415.m00470 cation efflux family protein potential ... 28 6.8
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 27 9.0
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 27 9.0
At4g28590.1 68417.m04089 expressed protein 27 9.0
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ... 27 9.0
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 27 9.0
At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1... 27 9.0
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 34.3 bits (75), Expect = 0.079
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = -3
Query: 464 LPQSNELPADFRACFVLTVAEGKSAIVAV--------NIITQRQSETVALVHKLNGVFGE 309
L + +LP DF +C + ++ G A+ V N + Q +S+ A+ NG
Sbjct: 482 LSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQS 541
Query: 308 DKSELNWETITDDVLG 261
+SE + ET+T+ +LG
Sbjct: 542 GESEDSTETVTEAILG 557
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 13 PVIVILCLFVASLYAADSDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNV 192
P +I+ + V +L S +P D+L++ L D DSA +K E K + N+
Sbjct: 161 PSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMGSIAPNL 220
>At5g63450.1 68418.m07965 cytochrome P450, putative
Length = 510
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 411 GKDKTSPKVSWKFIALWENNKVYFKILNTERN 506
G+D TS ++W F L +N+ V KIL+ RN
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRN 337
>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 508
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 357 LTLSNDVHGNDGRLAFG-DGKDKTSPKVSWKFIALWENNKVYFKI 488
L S+D D LAF G+D TS +SW F L EN +V KI
Sbjct: 293 LNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337
>At5g64820.1 68418.m08155 hypothetical protein
Length = 145
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 425 CFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETI 279
C ++ + G SA A + ++ E ++V ++G+FG +WE I
Sbjct: 15 CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI 63
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 479 VDLVVLPQSNELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKS 300
VDLV+ P D+ T G+ + AV+IIT+ V L+HK+ G+
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGL-AVSIITETD---VKLIHKIEEEVGKKME 426
Query: 299 ELNWETITDDV 267
N + ITD +
Sbjct: 427 PYNKKVITDSL 437
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 564 VNSVDSFRAQWYLQPAKYDKDNLFYIY 644
+NS+++FR +WY + D+D L I+
Sbjct: 362 LNSLETFRVKWYYSEEQEDRDFLSLIF 388
>At5g10060.1 68418.m01165 expressed protein
Length = 469
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 139 EKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLRAPRTSSVIVSQ 291
EK H E + + + N +++N+K E+ + W P+ IVSQ
Sbjct: 46 EKQFHSTEMDQKVPLLYLANDILQNSKRQGNEFVQEFWNVLPKALKDIVSQ 96
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 102 VKLLLQNVVRDVGICSIQRCHEKT*NNYD 16
+K ++N+++ G+CSIQR H + N D
Sbjct: 727 LKEAMRNILKTKGVCSIQRLHVWSFTNSD 755
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 205 IRNNKMNCMEYAYQLWLRAPRTSSVIVSQLSSDLSSPK 318
I +N C++ Y W A SSV +S LS SSP+
Sbjct: 92 IYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPE 129
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 273 RCPWSPEPKLIGVLHAVHLVVSYQF 199
R WSP+ IGV HL+ Y F
Sbjct: 412 RVAWSPDGNFIGVAFTKHLIQLYAF 436
>At4g28590.1 68417.m04089 expressed protein
Length = 331
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 335 HKLNGVFGEDKSELNWETITDD 270
H + V G+D SE++WE DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201
>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450
Length = 506
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 411 GKDKTSPKVSWKFIALWENNKVYFKIL 491
G+D TS ++W F L EN+ V KIL
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKIL 330
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 4 KMKPVIVILCLFVASLYAA-DSDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEV 180
K K +LC+ +++ DS + + + + IV DYD+ V+ S + E+ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457
Query: 181 ITNVVN 198
+TN V+
Sbjct: 458 LTNGVD 463
>At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 785
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 619 SYLAGCRYHWALKLSTLLTPKAHVVAVRVSTDSQYQIWLRSV 494
S+L + +W L LST+L+ K H+ V + ++ Y+ W V
Sbjct: 345 SFLKIPKQYW-LFLSTMLSVKGHIGLVLLDSNLMYKKWFTPV 385
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,886
Number of Sequences: 28952
Number of extensions: 268406
Number of successful extensions: 1022
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -